Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0238
         (718 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF177386-1|AAD51369.1| 3584|Drosophila melanogaster huntingtin h...    30   2.7  
AF147779-1|AAF03256.1| 3583|Drosophila melanogaster Huntington d...    30   2.7  
AF146362-1|AAF03255.1| 3583|Drosophila melanogaster Huntington d...    30   2.7  
AE014297-4258|AAF56808.1| 3583|Drosophila melanogaster CG9995-PA...    30   2.7  
BT025846-1|ABF85746.1| 1325|Drosophila melanogaster IP14385p pro...    29   4.8  
AE014297-3323|AAF56132.3| 1348|Drosophila melanogaster CG4393-PA...    29   4.8  

>AF177386-1|AAD51369.1| 3584|Drosophila melanogaster huntingtin
            homolog protein.
          Length = 3584

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 104  RRPLDRGPVEDQGIL*GSHVRAPHQNAGSC 15
            R+P+D GP++D G+L    ++ P   AG C
Sbjct: 1814 RQPIDAGPLQDMGMLFVHGLQPPTPPAGDC 1843


>AF147779-1|AAF03256.1| 3583|Drosophila melanogaster Huntington
            disease protein homolog protein.
          Length = 3583

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 104  RRPLDRGPVEDQGIL*GSHVRAPHQNAGSC 15
            R+P+D GP++D G+L    ++ P   AG C
Sbjct: 1813 RQPIDAGPLQDMGMLFVHGLQPPTPPAGDC 1842


>AF146362-1|AAF03255.1| 3583|Drosophila melanogaster Huntington
            disease protein homolog protein.
          Length = 3583

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 104  RRPLDRGPVEDQGIL*GSHVRAPHQNAGSC 15
            R+P+D GP++D G+L    ++ P   AG C
Sbjct: 1813 RQPIDAGPLQDMGMLFVHGLQPPTPPAGDC 1842


>AE014297-4258|AAF56808.1| 3583|Drosophila melanogaster CG9995-PA
            protein.
          Length = 3583

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 104  RRPLDRGPVEDQGIL*GSHVRAPHQNAGSC 15
            R+P+D GP++D G+L    ++ P   AG C
Sbjct: 1813 RQPIDAGPLQDMGMLFVHGLQPPTPPAGDC 1842


>BT025846-1|ABF85746.1| 1325|Drosophila melanogaster IP14385p
           protein.
          Length = 1325

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 55  PYRIPWSSTGPLSRGLLGATSDQTLQLGRPNNALKHN 165
           P   P SST  LS+ LL +    TL+   PN  LK N
Sbjct: 583 PIPAPRSSTTKLSKELLKSAESATLKSYNPNRKLKRN 619


>AE014297-3323|AAF56132.3| 1348|Drosophila melanogaster CG4393-PA
           protein.
          Length = 1348

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 55  PYRIPWSSTGPLSRGLLGATSDQTLQLGRPNNALKHN 165
           P   P SST  LS+ LL +    TL+   PN  LK N
Sbjct: 583 PIPAPRSSTTKLSKELLKSAESATLKSYNPNRKLKRN 619


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,515,406
Number of Sequences: 53049
Number of extensions: 568931
Number of successful extensions: 1269
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3190721655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)