Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0238
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025727-6|AAY55898.1|  558|Caenorhabditis elegans Hypothetical ...    29   2.5  
AF063009-2|AAO21399.1|  438|Caenorhabditis elegans Innexin prote...    28   7.7  
AF063009-1|AAM45360.1|  454|Caenorhabditis elegans Innexin prote...    28   7.7  

>AC025727-6|AAY55898.1|  558|Caenorhabditis elegans Hypothetical
           protein Y73E7A.9 protein.
          Length = 558

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 1   VCITRHDPAFWWGALTCD 54
           +C   HDP  +W A+ CD
Sbjct: 130 ICTVEHDPTLFWAAVECD 147


>AF063009-2|AAO21399.1|  438|Caenorhabditis elegans Innexin protein
           19, isoform b protein.
          Length = 438

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 191 ANVNRIVIE*ALLIACVNSKVF 256
           AN+NR  ++ ALLI  +N KVF
Sbjct: 265 ANLNRYTVQCALLINIINEKVF 286


>AF063009-1|AAM45360.1|  454|Caenorhabditis elegans Innexin protein
           19, isoform a protein.
          Length = 454

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 191 ANVNRIVIE*ALLIACVNSKVF 256
           AN+NR  ++ ALLI  +N KVF
Sbjct: 281 ANLNRYTVQCALLINIINEKVF 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,537,433
Number of Sequences: 27780
Number of extensions: 311708
Number of successful extensions: 597
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)