Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0238
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50575.1 68414.m05677 lysine decarboxylase family protein con...    29   3.1  
At2g18220.1 68415.m02123 expressed protein contains Pfam domain ...    28   7.1  
At2g03200.1 68415.m00273 aspartyl protease family protein contai...    27   9.4  
At1g04940.1 68414.m00491 tic20 family protein similar to Tic20 (...    27   9.4  

>At1g50575.1 68414.m05677 lysine decarboxylase family protein
           contains Pfam profile PF03641: lysine decarboxylase
           family
          Length = 306

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 70  WSSTGPLSRGLLGATSDQTLQLGRPNNALKHNFRDGSQTKSECEPY 207
           WS  GP   GL+ A ++  L+  +P   +K     G  T S+  PY
Sbjct: 125 WSGAGP---GLMDAVTEGALEAEKPVGGIKIEKEAGEWTASKFHPY 167


>At2g18220.1 68415.m02123 expressed protein contains Pfam domain
           PF03715: Uncharacterised protein family (UPF0120)
          Length = 779

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
 Frame = +3

Query: 543 LFLEIACDE-GSVCEEK-----YK*QKLVARFLNINKLYHITFIHSCLRSLV 680
           LFL   C   GS C +      YK   L  +F+N +KL HI+F+ +C   L+
Sbjct: 312 LFLRDLCIRLGSDCVDDCFKGMYKAYVLNCQFVNADKLKHISFLGNCFIELL 363


>At2g03200.1 68415.m00273 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 461

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 589 STSSKSLLPVFSILTNCIISPSST 660
           S+SS  L P F IL +C+IS SS+
Sbjct: 4   SSSSSLLFPFFLILFSCLISVSSS 27


>At1g04940.1 68414.m00491 tic20 family protein similar to Tic20
           (GI:3769673) [Pisum sativum]; contains TIGRFAM IGR00994:
           chloroplast protein import component, Tic20 family
          Length = 501

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 22  PAFWWGALTCDPYRIPWSST 81
           P +WW  L C PY +P   T
Sbjct: 108 PQWWWRTLACLPYLMPLHET 127


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,324,585
Number of Sequences: 28952
Number of extensions: 272127
Number of successful extensions: 523
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)