Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0237
         (664 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    26   0.24 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    26   0.24 
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   3.9  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   9.0  
AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory recept...    21   9.0  
AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory recept...    21   9.0  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 95  ILGDSGVGKTSLMNQFVNKKFSN 163
           ILG SG GKT+L+N       SN
Sbjct: 109 ILGSSGAGKTTLLNTLTFHTSSN 131


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 95  ILGDSGVGKTSLMNQFVNKKFSN 163
           ILG SG GKT+L+N       SN
Sbjct: 109 ILGSSGAGKTTLLNTLTFHTSSN 131


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 125 SLMNQFVNKKFSNQYKATIGADFLTKEVIVD 217
           +L+N  + K + N+Y+  I     ++E IVD
Sbjct: 484 ALINSILRKLYKNKYRKLIVDGKKSEEQIVD 514


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 599 ELYNEFPDQIKLNANDNGRNR 661
           + Y +F   IKL  +++ +NR
Sbjct: 425 KFYEQFSKNIKLGIHEDSQNR 445


>AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory receptor
           candidate 29 protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 601 FSFGFLCQCVACYCL 557
           +SFGFL     C CL
Sbjct: 324 WSFGFLIVRTVCLCL 338


>AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory receptor
           candidate 7 protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 601 FSFGFLCQCVACYCL 557
           +SFGFL     C CL
Sbjct: 324 WSFGFLIVRTVCLCL 338


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,183
Number of Sequences: 336
Number of extensions: 3576
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)