Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0237
(664 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 275 3e-75
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 236 2e-63
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 135 5e-33
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 133 2e-32
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 132 4e-32
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 126 3e-30
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 126 4e-30
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 114 1e-26
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 99 5e-22
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 96 5e-21
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 79 4e-16
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 76 4e-15
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 76 5e-15
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 72 9e-14
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 71 2e-13
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 69 5e-13
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 68 1e-12
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 68 1e-12
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 37 0.002
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 37 0.003
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 34 0.021
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 33 0.049
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 32 0.085
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po... 31 0.15
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 31 0.15
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 31 0.20
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 30 0.26
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 29 0.60
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 28 1.0
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 28 1.0
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 27 1.8
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 27 1.8
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 27 2.4
SPAC4H3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 3.2
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 26 5.6
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 25 7.4
SPAC926.05c |||diphthamide biosynthesis protein Dph4 |Schizosacc... 25 9.7
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 25 9.7
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 25 9.7
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 25 9.7
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 9.7
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 275 bits (675), Expect = 3e-75
Identities = 126/195 (64%), Positives = 162/195 (83%), Gaps = 2/195 (1%)
Frame = +2
Query: 59 MSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQ 238
M+ +KK LLKVIILG+SGVGKTS+MNQ+VN+KFS YKATIGADFLTKEV+VDD++VT+Q
Sbjct: 1 MAGKKKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQ 60
Query: 239 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPF 418
+WDTAGQERFQSLGVAFYRGADCCVLV+DV +F++L+SWRDEFLIQASP +P+ FPF
Sbjct: 61 LWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPF 120
Query: 419 VILGNKVDLD--NRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQTIARNALAQET 592
++LGNKVD++ R VS + +CQ++ +IPYFETSAKEA+NV+ AF+T+A+ AL
Sbjct: 121 ILLGNKVDVEEQKRMVSKSKALAFCQARGEIPYFETSAKEAINVQEAFETVAKLALENMD 180
Query: 593 EAELYNEFPDQIKLN 637
++ +F D I L+
Sbjct: 181 SDDIAADFTDPIHLD 195
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 236 bits (577), Expect = 2e-63
Identities = 114/198 (57%), Positives = 155/198 (78%), Gaps = 5/198 (2%)
Frame = +2
Query: 59 MSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQ 238
MS++K++ LKV+ILGDSGVGKT LMNQFVN+KFS +YKATIGADFLTK+V+VDD++VT+Q
Sbjct: 1 MSAQKRVFLKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQ 60
Query: 239 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPF 418
+WDTAGQERFQSLG+AFYRGADCCV+V++V +F S+E+WR EFL Q S +D FPF
Sbjct: 61 LWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTS-QDECAFPF 119
Query: 419 VILGNKVDLD--NRAVSVKRGQQWCQSK--NDIPYFETSAKEAVNVELAFQTIARNALAQ 586
+I+GN++D D RAVS+ R +C+SK +++ +FE SAKE NV F+T++R AL
Sbjct: 120 IIVGNQIDKDASKRAVSLHRALDYCKSKHGSNMIHFEASAKENTNVTDLFETVSRLALEN 179
Query: 587 ETEA-ELYNEFPDQIKLN 637
E+ + N+F + + L+
Sbjct: 180 ESSRDDFVNDFSEPLLLS 197
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 135 bits (327), Expect = 5e-33
Identities = 65/163 (39%), Positives = 110/163 (67%), Gaps = 1/163 (0%)
Frame = +2
Query: 80 LLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQ 259
L K +++GDSGVGK++L+ +F +F+ + K+TIG +F T+ +++D++ + QIWDTAGQ
Sbjct: 10 LFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQ 69
Query: 260 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKV 439
ER++++ A+YRGA ++V+D+T ++F ++ W E A N +++GNK
Sbjct: 70 ERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHAD----SNIVIMLVGNKT 125
Query: 440 DLDN-RAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQTI 565
DL + RAVS + Q + ++N++ + ETSA +A NVE AFQT+
Sbjct: 126 DLLHLRAVSTEEAQAFA-AENNLSFIETSAMDASNVEEAFQTV 167
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 133 bits (322), Expect = 2e-32
Identities = 73/193 (37%), Positives = 116/193 (60%), Gaps = 2/193 (1%)
Frame = +2
Query: 86 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQER 265
K++ LG+ VGKTSL+ +F+ +F N Y+ATIG DFL+K + ++DR V +Q+WDTAGQER
Sbjct: 13 KLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 72
Query: 266 FQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKVDL 445
F+SL ++ R + ++V+D+T N+F + E W ++ + D+ V++GNK DL
Sbjct: 73 FRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERG----DDVIIVLVGNKTDL 128
Query: 446 -DNRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQTIARNALAQE-TEAELYNEFP 619
D R V+ + G++ + I + ETSAK NV+L F+ IA+ E E +
Sbjct: 129 ADKRQVTQEEGEKKAKELK-IMHMETSAKAGHNVKLLFRKIAQMLPGMENVETQSTQMID 187
Query: 620 DQIKLNANDNGRN 658
I+ N N++ N
Sbjct: 188 VSIQPNENESSCN 200
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 132 bits (319), Expect = 4e-32
Identities = 76/195 (38%), Positives = 117/195 (60%), Gaps = 1/195 (0%)
Frame = +2
Query: 80 LLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQ 259
L+K++++GDSGVGK+ L+ +F F+ + TIG DF + + +D + + +QIWDTAGQ
Sbjct: 9 LIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 68
Query: 260 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKV 439
ERF+++ A+YRGA +L++DVT +F ++ +W AS +N +++GNK
Sbjct: 69 ERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHAS----ENVYKILIGNKC 124
Query: 440 DL-DNRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQTIARNALAQETEAELYNEF 616
D D R VS ++GQ + + E SAK VNV+ AF T+AR Q+ +AE NEF
Sbjct: 125 DCEDQRQVSFEQGQALADELG-VKFLEASAKTNVNVDEAFFTLAREIKKQKIDAE--NEF 181
Query: 617 PDQIKLNANDNGRNR 661
+Q N D G +R
Sbjct: 182 SNQ--ANNVDLGNDR 194
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 126 bits (304), Expect = 3e-30
Identities = 64/172 (37%), Positives = 108/172 (62%), Gaps = 1/172 (0%)
Frame = +2
Query: 59 MSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQ 238
M+ L K++++GDSGVGK+ L+ +F + ++ Y +TIG DF + ++ + V +Q
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQ 60
Query: 239 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPF 418
IWDTAGQERF+++ ++YRGA ++V+DVT ++F +++ W E A +
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYA----VEGVNR 116
Query: 419 VILGNKVDL-DNRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQTIAR 571
+++GNK D+ D + V +++ S N IP+ ETSAK++ NVE AF T++R
Sbjct: 117 LLVGNKSDMVDKKVVEYSVAKEFADSLN-IPFLETSAKDSTNVEQAFLTMSR 167
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 126 bits (303), Expect = 4e-30
Identities = 67/165 (40%), Positives = 103/165 (62%), Gaps = 3/165 (1%)
Frame = +2
Query: 86 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRI-VTMQIWDTAGQE 262
K+++LGDS VGK+SL+ +FV +F + ++TIGA FLT+ + +D+ V ++IWDTAGQE
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 263 RFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKVD 442
R++SL +YR A+C ++V+D+T + + +SW E QA P+ + GNK+D
Sbjct: 76 RYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQA----PEGIVIALAGNKLD 131
Query: 443 L--DNRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQTIAR 571
L + RAV + + N + +FETSAK A NV F IA+
Sbjct: 132 LAQERRAVEKADAEAYAAEAN-LLFFETSAKTAENVNELFTAIAK 175
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 114 bits (274), Expect = 1e-26
Identities = 61/174 (35%), Positives = 98/174 (56%), Gaps = 5/174 (2%)
Frame = +2
Query: 80 LLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIV----DDRIVTMQIWD 247
L+K+++ G SG GK+ L+ +FV ++ +Q T+G DF ++ + V + + +QIWD
Sbjct: 9 LVKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWD 68
Query: 248 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVIL 427
TAGQE+F+S+ +YRGA VLV+DVT ++F+ L SW + A P V+
Sbjct: 69 TAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMA----PSTICVVLA 124
Query: 428 GNKVDLDN-RAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQTIARNALAQ 586
G+K DL N R VS + ++C K+ ETS+ NVE F ++ + +
Sbjct: 125 GSKSDLQNQRQVSTEEAAEFCSEKHISSAHETSSYTGSNVEECFLSVVSTIITR 178
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 99.1 bits (236), Expect = 5e-22
Identities = 55/163 (33%), Positives = 95/163 (58%), Gaps = 1/163 (0%)
Frame = +2
Query: 86 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQER 265
K++++GD GVGK++L Q + F ++Y TI D K+ +D + + DTAGQE
Sbjct: 10 KLVVVGDGGVGKSALTIQLIQSHFVDEYDPTI-EDSYRKKCEIDGEGALLDVLDTAGQEE 68
Query: 266 FQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKVDL 445
+ ++ + R + +LV+++T+ ++F + ++ + L +D D FP V++ NK DL
Sbjct: 69 YSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQIL---RVKDKDTFPVVLVANKCDL 125
Query: 446 D-NRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQTIAR 571
+ R VS G+Q +S + + Y ETSAK +NVE AF ++ R
Sbjct: 126 EAERVVSRAEGEQLAKSMHCL-YVETSAKLRLNVEEAFYSLVR 167
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 95.9 bits (228), Expect = 5e-21
Identities = 51/162 (31%), Positives = 85/162 (52%)
Frame = +2
Query: 86 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQER 265
K++++GD G GKT+ + + + +F +Y AT+G + + + +WDTAGQE+
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 266 FQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKVDL 445
L +Y C +++FDVT+ T+K++ W + + R +N P V+ GNKVD+
Sbjct: 71 LGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLV-----RVCENIPIVLCGNKVDV 125
Query: 446 DNRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQTIAR 571
R V K K ++ Y++ SAK N E F +AR
Sbjct: 126 KERKVKAK--AITFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 79.4 bits (187), Expect = 4e-16
Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 9/188 (4%)
Frame = +2
Query: 53 CKMSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVT 232
C S +K + K++ILGD GKTSL+N F F Y+ TI +++ ++ VD +
Sbjct: 4 CFGSKKKPIYRKIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYI-HDIFVDGNSIE 62
Query: 233 MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNF 412
+ +WDTAGQE + L Y ++ F V + + SLE+ ++L + S P
Sbjct: 63 LSLWDTAGQEEYDQLRSLSYSDTHVIMICFAVDSRD---SLENVITKWLPEVSSNCP-GV 118
Query: 413 PFVILGNKVDL---------DNRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQTI 565
V++ K DL ++ + + G + N + Y E SAK V AF
Sbjct: 119 KLVLVALKCDLRGADEEQVDHSKIIDYEEGLAAAKKINAVRYLECSAKLNRGVNEAFTEA 178
Query: 566 ARNALAQE 589
AR ALA +
Sbjct: 179 ARVALAAQ 186
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 76.2 bits (179), Expect = 4e-15
Identities = 56/182 (30%), Positives = 87/182 (47%), Gaps = 14/182 (7%)
Frame = +2
Query: 56 KMSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVI-VDDRIVT 232
K S+ + K++++GD G GKT L+ F + F +Y T+ +++T + +++
Sbjct: 6 KSGSKSETSKKLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIE 65
Query: 233 MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSL-ESWRDEFLIQASPRDPDN 409
+ +WDTAGQE + L Y ++ +L F + P + ++ E W E + PR
Sbjct: 66 LALWDTAGQEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPE-VQHFCPRT--- 121
Query: 410 FPFVILGNKVDL--DNRAVSVKRGQ-------QWCQS---KNDIPYFETSAKEAVNVELA 553
P V++G K DL D A V R Q Q QS + PY E SAKE V
Sbjct: 122 -PIVLVGLKADLRKDRNATEVLRTQGLTPVTYQQAQSVALSMNAPYVECSAKENTGVNEV 180
Query: 554 FQ 559
FQ
Sbjct: 181 FQ 182
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 75.8 bits (178), Expect = 5e-15
Identities = 56/183 (30%), Positives = 86/183 (46%), Gaps = 14/183 (7%)
Frame = +2
Query: 74 KLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTA 253
+L K++I+GD GKT L+ F F Y T+ +++ +V VD R + + +WDTA
Sbjct: 4 ELRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVA-DVEVDGRHIELALWDTA 62
Query: 254 GQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSL-ESWRDEFLIQASPRDPDNFPFVILG 430
GQE + L Y + ++ F V AP + ++ E W E L S N P +++G
Sbjct: 63 GQEDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCS-----NLPILLVG 117
Query: 431 NKVDLDN-------------RAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQTIAR 571
KVDL N + ++ + GQ Q Y E SAK V F+T AR
Sbjct: 118 CKVDLRNDPKTIEELSKTSQKPITFEEGQVVAQKIGAYKYLECSAKLNEGVNEVFETAAR 177
Query: 572 NAL 580
++
Sbjct: 178 ASM 180
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 71.7 bits (168), Expect = 9e-14
Identities = 39/128 (30%), Positives = 75/128 (58%)
Frame = +2
Query: 86 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQER 265
K++++GD GKTSL++ F F +Y T+ ++++ + VD + V + +WDTAGQE
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVS-DCRVDGKSVQLALWDTAGQEE 68
Query: 266 FQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKVDL 445
++ L Y A ++ F + +P+ SLE+ +++ + + P N PF+++G K DL
Sbjct: 69 YERLRPMSYAKAHIILVGFAIDSPD---SLENVSTKWIEEINTLCP-NVPFILVGMKADL 124
Query: 446 DNRAVSVK 469
+ V+++
Sbjct: 125 RSDPVAIE 132
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 70.5 bits (165), Expect = 2e-13
Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 1/161 (0%)
Frame = +2
Query: 86 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQER 265
++ +LG VGK+SL Q+V F Y TI F +K + + +I DTAGQ+
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTF-SKNIKYKGQEFATEIIDTAGQDE 66
Query: 266 FQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKVDL 445
+ L G VLV+ +T+ ++F+ ++ RD+ L + + P V++GNK DL
Sbjct: 67 YSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKIL---NHTGTEWVPIVVVGNKSDL 123
Query: 446 D-NRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQTI 565
RAV+ + G+ ++ + E SA+ NV AF+ I
Sbjct: 124 HMQRAVTAEEGKA-LANEWKCAWTEASARHNENVARAFELI 163
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 69.3 bits (162), Expect = 5e-13
Identities = 30/99 (30%), Positives = 54/99 (54%)
Frame = +2
Query: 68 RKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWD 247
+ + +KV ++GDS +GKTSLM +V F + T+G +F+ K + + + +T IWD
Sbjct: 6 KNNVTIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWD 65
Query: 248 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESW 364
GQ F ++ A + +FD++ +T S++ W
Sbjct: 66 LGGQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEW 104
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 67.7 bits (158), Expect = 1e-12
Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 10/179 (5%)
Frame = +2
Query: 74 KLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTA 253
+L K++I+GD GKT L+ F F Y T+ +++ +V VD R V + +WDTA
Sbjct: 4 ELRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVA-DVEVDGRHVELALWDTA 62
Query: 254 GQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSL-ESWRDE---------FLIQASPRDP 403
GQE + L Y + ++ F V +P++ ++ E W E L+ A D
Sbjct: 63 GQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSSLPILLVACKADL 122
Query: 404 DNFPFVILGNKVDLDNRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQTIARNAL 580
N P I+ + V+ + GQ Q Y E SAK V F++ R A+
Sbjct: 123 RNDP-KIIEELSKTNQHPVTTEEGQAVAQKIGAYKYLECSAKTNEGVREVFESATRAAM 180
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 67.7 bits (158), Expect = 1e-12
Identities = 42/135 (31%), Positives = 73/135 (54%), Gaps = 2/135 (1%)
Frame = +2
Query: 83 LKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQE 262
+K +++GD VGKT L+ + KF + Y T+ ++ V++ D T+ ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVT-VMIGDEPYTLGLFDTAGQE 62
Query: 263 RFQSLGVAFYRGADCCVLVFDVTAPNTFKSL-ESWRDEFLIQASPRDPDNFPFVILGNKV 439
+ L Y D ++ F VT+P +F+++ E W E + P P +I+G ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPE-VHHHCP----GVPCLIVGTQI 117
Query: 440 DL-DNRAVSVKRGQQ 481
DL D+ +V K +Q
Sbjct: 118 DLRDDPSVQQKLARQ 132
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 37.1 bits (82), Expect = 0.002
Identities = 36/178 (20%), Positives = 72/178 (40%), Gaps = 3/178 (1%)
Frame = +2
Query: 50 LCKMSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIV 229
+ + K+ ++V++LG GKT+++ +N+ N+ T G T EV +
Sbjct: 6 ILRQQKLKEREVRVLLLGLDNAGKTTILKCLLNEDV-NEVSPTFGFQIRTLEV----EGL 60
Query: 230 TMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDN 409
IWD GQ+ ++ ++ + + V D + + E L++
Sbjct: 61 RFTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTS- 119
Query: 410 FPFVILGNKVDLDNRAVSVKRGQQWCQSKNDIPY---FETSAKEAVNVELAFQTIARN 574
++L NK D+ S + + SK + F SA +N++ A +A +
Sbjct: 120 --ILVLANKSDVSGALSSEEISKILNISKYKSSHWRIFSVSALTGLNIKDAISWLAND 175
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 36.7 bits (81), Expect = 0.003
Identities = 30/121 (24%), Positives = 51/121 (42%)
Frame = +2
Query: 83 LKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQE 262
+++++LG GKT+++ K NQ TI E + I +WD GQ+
Sbjct: 22 MRILMLGLDAAGKTTILY----KLKLNQSVVTIPTVGFNVETVTYKNI-KFNVWDVGGQD 76
Query: 263 RFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKVD 442
+ + L ++ G + V D N + R E S R+ + ++L NK D
Sbjct: 77 KIRPLWRHYFTGTKGLIFVVDSADSN---RISEARQELHRIISDREMRDCLLLVLANKQD 133
Query: 443 L 445
L
Sbjct: 134 L 134
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 33.9 bits (74), Expect = 0.021
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Frame = +2
Query: 86 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGA--DFLTKEVIVDDRIVTMQIWDTAGQ 259
KV+++G SG GK+S M V + + +GA D V +V + +WD GQ
Sbjct: 4 KVLLMGRSGSGKSS-MRSIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLV-LNLWDCGGQ 61
Query: 260 ERFQSLGVA-----FYRGADCCVLVFDVTAPNTFKSLESWRD--EFLIQASPR 397
E F ++ +R + VFDV + + L ++R+ E + SP+
Sbjct: 62 EAFMENYLSAQRDHIFRNVQVLIYVFDVESREFERDLVTFRNCLEATVANSPQ 114
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 32.7 bits (71), Expect = 0.049
Identities = 25/68 (36%), Positives = 33/68 (48%)
Frame = +2
Query: 53 CKMSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVT 232
CK RK + V ILG S GK+SL+N N++ S G EV+VD
Sbjct: 232 CKEVLRKGI--NVAILGPSNAGKSSLINLLANRRIS-IVSPQSGTTRDAIEVLVDINGFP 288
Query: 233 MQIWDTAG 256
+ + DTAG
Sbjct: 289 VLLSDTAG 296
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 31.9 bits (69), Expect = 0.085
Identities = 24/123 (19%), Positives = 55/123 (44%)
Frame = +2
Query: 83 LKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQE 262
++++++G GKT+++ + + TIG + T V+ R ++ +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYRNISFTVWDVGGQD 72
Query: 263 RFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKVD 442
+ + L +++ + V D N + + +E + + + ++ NK D
Sbjct: 73 KIRPLWRHYFQNTQGIIFVVD---SNDRERISEAHEELQRMLNEDELRDALLLVFANKQD 129
Query: 443 LDN 451
L N
Sbjct: 130 LPN 132
>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 31.1 bits (67), Expect = 0.15
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +2
Query: 56 KMSSRKKLLLKVIILGDSGVGKTSLMNQFVNK 151
K SS+K + L ++++GD G+G+T+ +N K
Sbjct: 44 KKSSKKGIPLNLMVVGDVGLGRTAFINTLCEK 75
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 31.1 bits (67), Expect = 0.15
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +2
Query: 68 RKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLT-KEVIVD-DRIVTMQI 241
R + + +I++G+S +GKT+ +N F+ +N ++ DF+ K + D D+ + I
Sbjct: 114 RNGIDINLIVVGESSLGKTTFVNSFLQSNDTN-FRPKKTMDFVEHKATLSDGDQKFNLTI 172
Query: 242 WDTAG 256
DT G
Sbjct: 173 VDTPG 177
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 30.7 bits (66), Expect = 0.20
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +2
Query: 68 RKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADF 193
R+ V++LG+SG GK++L+N +N+ + ++ DF
Sbjct: 91 RQGFNFNVLVLGESGSGKSTLVNTLLNRDVYPPTQKSLTGDF 132
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 30.3 bits (65), Expect = 0.26
Identities = 27/119 (22%), Positives = 55/119 (46%)
Frame = +2
Query: 86 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQER 265
K++ LG GKT+L++ N + + + T+ ++E+ + + V +D G ++
Sbjct: 22 KMLFLGLDNAGKTTLLHMLKNDRLAVM-QPTLHPT--SEELAIGN--VRFTTFDLGGHQQ 76
Query: 266 FQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKVD 442
+ L ++ + V + D F+ L + E + + PF+ILGNK+D
Sbjct: 77 ARRLWRDYFPEVNGIVYLVDCC---DFERLSESKAELDALLAMEELARVPFLILGNKID 132
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 29.1 bits (62), Expect = 0.60
Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 1/134 (0%)
Frame = +2
Query: 56 KMSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDR-IVT 232
K+S + + ++G GKT+L++ F+N +N + T + E R +V
Sbjct: 413 KVSKYDRNVFLCFVVGSKSCGKTALLSSFIN---NNTNRLTPNTVVNSVEFQSTQRYLVL 469
Query: 233 MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNF 412
+I +T + + D L++D + PN+F + + L+ P D
Sbjct: 470 SEIGETDLDILAEPKSL---EACDILCLLYDSSNPNSFSFIAN-----LLNLYP-DLQKI 520
Query: 413 PFVILGNKVDLDNR 454
P V K DLD +
Sbjct: 521 PCVFAATKADLDRQ 534
Score = 28.3 bits (60), Expect = 1.0
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +2
Query: 83 LKVIILGDSGVGKTSLMNQFVNK 151
++V+I GD GVGK+SL++ + +
Sbjct: 4 VRVVICGDQGVGKSSLISALIQE 26
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 56 KMSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGAD 190
K+ SR + +++ G+SG+GKT+ F N FS K+ +G +
Sbjct: 20 KIVSRNGVAFTLMLCGESGLGKTT----FCNTLFSTTIKSHMGPE 60
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 230 TMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPN 340
T +IWD +++ +L V + G D VL ++ PN
Sbjct: 315 TFRIWDVRNKQKTSALTVNAHPGVDVNVLSWNTRVPN 351
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = -2
Query: 345 NVLGAVTSKTNTQQSAPR*KATPSDWNRSWPAVSHICIVTILSSTITSFVRK 190
N L + S TNT + + T S+WN +SH + +L + IT F +K
Sbjct: 129 NQLSVIRSSTNTVKGRKKNPTTNSNWN----GISH--VNALLDAIITLFQKK 174
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +2
Query: 44 KLLCKMSSRKKLL--LKVIILGDSGVGKTSLMNQFVNK 151
K L S++KKL L V ++G VGK+S++N VN+
Sbjct: 255 KSLKSYSAKKKLKSSLTVGVIGYPNVGKSSVINALVNR 292
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 572 NALAQETEAELYNEFPDQIKLNANDN 649
N L ++ + EF DQ+KLNAN N
Sbjct: 349 NVLKMASKIPKFVEFHDQVKLNANMN 374
>SPAC4H3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 131
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 557 QTIARNALAQETEAELYNEFPDQIKLN 637
+T+ + AQET A+LY E D + N
Sbjct: 3 ETVNKILRAQETRAQLYKELEDALNAN 29
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = -2
Query: 240 ICIVTILSSTITSFVRKSAPIVALYWLENFL 148
I +V++++ T+ + + +API YW + F+
Sbjct: 373 IMVVSMIAFTVGTILIATAPIHQTYWAQTFV 403
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 25.4 bits (53), Expect = 7.4
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Frame = +2
Query: 89 VIILGDSGVGKTSLMNQFVNKKFS----NQYKATIGADFLTKEVIVDDRIVTMQIWDTAG 256
V +LG GK++L+N FS ++ + T +L+K + I+ M + T G
Sbjct: 42 VAVLGSQSTGKSTLLNNLFGTSFSVMDASKRQQTTKGIWLSK--ANNSPILVMDVEGTDG 99
Query: 257 QER 265
+ER
Sbjct: 100 RER 102
>SPAC926.05c |||diphthamide biosynthesis protein Dph4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = +2
Query: 485 CQSKNDIPYFETSAKEAVNVELAFQTIARNALAQETEAELYNEFPDQIKLNANDNG 652
C+ K + Y KEA V + + + + QE E+ Y D + DNG
Sbjct: 36 CKEKPSVVYTIDQVKEAYQVLSSEKDRQQYQIKQEEESSHYYSIVDLSEFEELDNG 91
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 44 KLLCKMSSRKKLLLKVIILGDSGV 115
KL+C S+K L K+++ GD+ V
Sbjct: 525 KLVCDFESKKPTLEKLLVWGDNHV 548
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 25.0 bits (52), Expect = 9.7
Identities = 7/21 (33%), Positives = 18/21 (85%)
Frame = +2
Query: 89 VIILGDSGVGKTSLMNQFVNK 151
++++G++G GK++ + QF+N+
Sbjct: 115 IVVVGETGSGKSTQIPQFLNE 135
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/41 (21%), Positives = 22/41 (53%)
Frame = +2
Query: 89 VIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVI 211
+++ G+SG GKT + + + T+G+ + +++I
Sbjct: 166 ILVTGESGAGKTENTKRIIQYLAAIASSTTVGSSQVEEQII 206
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 9.7
Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 5/106 (4%)
Frame = +2
Query: 164 QYKATIGADFLTKEVIVDDRIVTMQIWDTAGQERFQSLGVA-----FYRGADCCVLVFDV 328
Q I F V D+IV +++W + A FYR + +V
Sbjct: 752 QQSVKITEPFKRSSSNVHDKIVFLEVWKSIMAALIYVFSTATEDTVFYRVVNGIQQATEV 811
Query: 329 TAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKVDLDNRAVSV 466
A + E Q + DP + P L + +++R ++V
Sbjct: 812 AAAYELNEPVDYAIERFCQFTALDPSSVPGTQLNTAIKVEDRIITV 857
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,854,767
Number of Sequences: 5004
Number of extensions: 61388
Number of successful extensions: 262
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -