Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0237
         (664 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    27   0.16 
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   6.0  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              21   7.9  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 325 RNCPQHV*VLRELERRIPD 381
           +N PQH  +LREL ++IPD
Sbjct: 376 QNHPQHPDILRELLKKIPD 394


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 592 GFLCQCVACYCLKS*LYIDSFFGTCLKIRD 503
           G     +    L S +++ SFFG C  IR+
Sbjct: 47  GLAFPSITLIVLGSIIFVISFFGCCGAIRE 76


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 584 QETEAELYNEFPDQIKLNANDN 649
           ++ EA  Y EFP+  KL    N
Sbjct: 52  EDVEATEYGEFPEDEKLKCYFN 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,794
Number of Sequences: 438
Number of extensions: 4243
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)