Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0235
         (704 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     23   3.2  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    22   5.6  

>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 607 HVQWQVGPHPPSAHPTYRSAA 545
           H+Q+   PHP +AH    S A
Sbjct: 113 HMQFMQLPHPAAAHSALLSPA 133


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +3

Query: 381 IYIEQLNDYDAAEKIIEHLESTLEDADGVTPVHGRFYKLASEYYRVRG 524
           IY   L   +A    + HL S  E+ D V P++ +   +  +  ++ G
Sbjct: 186 IYTNLLRIIEADFSKLNHLLSGTENLDLVLPIYSQLVFMCKKINKLYG 233


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,320
Number of Sequences: 336
Number of extensions: 3617
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)