Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0235
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos...    70   4e-13
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    29   0.49 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    29   0.65 
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    29   0.86 
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    27   2.0  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    27   2.0  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    27   2.6  
SPCC790.03 |||rhomboid family protease|Schizosaccharomyces pombe...    27   3.5  
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    26   4.6  
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    26   6.0  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    26   6.0  
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    25   8.0  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    25   8.0  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    25   8.0  

>SPAC607.05 |rpn9||19S proteasome regulatory subunit
           Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 69.7 bits (163), Expect = 4e-13
 Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 10/194 (5%)
 Frame = +3

Query: 24  IDVSDFLTKKQASEP-ALAADWAKLEELYNKKLWHQLTLKLQEFVKNPALQRGDNLIQLY 200
           +++SDFL  +    P +L   +  +E+LY +KLW QLT  L  F   P  +     + LY
Sbjct: 7   VNMSDFLHDQATRAPESLQQSYILMEDLYERKLWKQLTDALIVFFDTP--ETVPLRLPLY 64

Query: 201 NNFLTTFESKINPLSLVEIIAHIVEQYVNKRDAVTFLEKVETKV---KMNDE------AL 353
            NF+ +F   IN L  V +     E   N  +A+  L ++  ++   K  D       A+
Sbjct: 65  TNFVNSFRPNINQLKAVYMGLKAFESCSND-EALRNLNQIVNELDEEKYKDAYVYSIVAI 123

Query: 354 ALCKVLQGQIYIEQLNDYDAAEKIIEHLESTLEDADGVTPVHGRFYKLASEYYRVRGPTG 533
           A  K++ G++  E       A KII+H++         + +H  +Y ++++YY+ +    
Sbjct: 124 ARIKLISGKLD-EARELLVKASKIIDHIDYV------ESLIHSSYYSVSADYYKAKADYA 176

Query: 534 RYYRAALRYVGCAD 575
           +YYR  L Y+ C D
Sbjct: 177 QYYRHCLLYLSCID 190



 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 629 LSSGVLAPDVYDLGELVAHPILHSL 703
           LS   +  D+Y+ GEL+ HP+   L
Sbjct: 206 LSVAAILGDIYNFGELLLHPVFELL 230


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
 Frame = +3

Query: 93  LEELYNKKLWHQLTLKLQEFVKNPALQRGDNLI---QLYNNFLTTFESKINPLSLVEIIA 263
           +E  Y    WH+L  +LQ+    P L    NL+   Q Y    + F SKI  + L E+ +
Sbjct: 81  IEPNYLLTAWHELWEELQDTYMTPILDSEANLLLLTQFYGKISSLFRSKIIQV-LEELQS 139

Query: 264 HIVEQYVNKRDAVTFLEKVET 326
            I E   + +  +  L +VE+
Sbjct: 140 RINEGEKDCQPVLDSLWEVES 160


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = +3

Query: 267  IVEQYVNKRDAVTFLEKVETKVKMNDEALALCKVLQGQIYIEQLNDYDAAEKIIEHLEST 446
            I E++  ++D   F EK    +  N   + + + L  Q Y+ ++ DY   E + + L+S 
Sbjct: 3023 ITEEFAVEKDV--FGEKTVVDLIPNGRNIPVTE-LNKQNYVNRMVDYKLRESVKDQLKSL 3079

Query: 447  LEDADGVTPVH 479
            L+    + P H
Sbjct: 3080 LDGFSDIIPSH 3090


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 993

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = +3

Query: 174  RGDNLIQLYNNFLTTFESKINPLSLVEIIAH--IVEQYVNKRDAVTFLEKVETKVKMNDE 347
            RG N+I L     TT+ES+ NP SL+  + +       +   D ++        VK+N  
Sbjct: 861  RGGNIIPLQQPGYTTYESRNNPYSLLIAMDNNGFASGSLYIDDGISMQTNSSLSVKLNSN 920

Query: 348  ALALCKVLQG 377
            +  +  V+ G
Sbjct: 921  SNTITCVVSG 930


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = +3

Query: 81  DWAKLEELYNKKLWHQLTLKLQEFVKNPALQRGDNLIQLYNNFLTTFESKINPLSLV 251
           DW   + +Y +     +TL       N A+ RG N+I +    LTT E+K NP  L+
Sbjct: 829 DWYDHKVIYRQHN-ENITLSAPLTHINVAI-RGGNIIPMQKPSLTTHETKQNPYDLL 883


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -3

Query: 456 HLRVYFLNVQLFSRLHHNHSAVQCIFVLVAPYTEPVLH 343
           HL   FL+ +LF      H +VQC   L  P   P  H
Sbjct: 189 HLFPQFLSAELFESASTVHRSVQCDNCLAHPIVGPRFH 226


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 315 KVETKVKMNDEALALCKVLQGQIYIEQLNDYDAAEKIIEHLESTLEDAD 461
           +V+ K+ + +  L   K +    Y+  +  YDA +K IE LES + D D
Sbjct: 834 EVDNKISIEETKL---KFMNVNSYV--MEQYDARKKEIEELESKMSDFD 877


>SPCC790.03 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 248

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
 Frame = -3

Query: 501 RLTYKIVRELESHHQHLRVYFLNVQLF---SRLHHNHSAVQCIFVLVAPYT 358
           R  Y+I+  +  H   L + F  V L    S+       + CI V V PYT
Sbjct: 51  RQLYEIITYVTLHLSMLHIVFNFVSLLPAMSQFEKKQGTLACILVTVIPYT 101


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 363 KVLQGQIYIEQLNDYDAAEKIIEHLESTLEDADGVTPVHGRFYKLASEYYR 515
           KV +GQI ++Q++ +   +KI       L D D  TP+ G    L SE ++
Sbjct: 288 KVSKGQI-VQQVSVFSTGKKIESQSLLNLIDTDIETPLKGSSELLYSEDFK 337


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +3

Query: 249 VEIIAHI--VEQYVNKRDAVTFLEKVETKVKMNDEALALCKVLQGQIYIEQLNDYDAAEK 422
           V+++ ++  VE    +RD VTF   +E  V  + +A   C + +  +  E L D    E+
Sbjct: 80  VQVLIYVFDVESREFERDLVTFRNCLEATVANSPQARVFCLIHKMDLVQEDLRDLVFEER 139

Query: 423 IIEHLEST 446
               LE++
Sbjct: 140 KAILLETS 147


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 174 RGDNLIQLYNNFLTTFESKINPLSLV 251
           RG +++ +    LTT+ES+ NP +L+
Sbjct: 836 RGGSVLPMQQPSLTTYESRQNPFNLL 861


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
 Frame = +3

Query: 114 KLWHQLTLKLQEFVKNPALQRGDNLIQLYNNFLTTFESKINPLSLVEIIAHIVEQYVNKR 293
           +LW+   L L +FVK       +    L+   L     + +  S+  + A   E++   +
Sbjct: 551 ELWN---LYLTKFVKRYQGTHMERTRDLFEQALEGCPPEFSK-SIYLLYADFEEKFGKAK 606

Query: 294 DAVTFLEKVETKVKMNDEALALCKVLQGQIYIEQ--LNDYDAAEKIIEHL-ESTLED 455
            +++ LEK   KVK  D  LA+  VL  ++ +    L      EK IE L +S ++D
Sbjct: 607 RSISILEKAADKVKTADR-LAIYNVLLVKVALNYGVLATRTVYEKAIESLSDSEVKD 662


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/38 (42%), Positives = 26/38 (68%)
 Frame = -1

Query: 209 KVIVQLYEVVSPLQGRILDEFLQF*SKLVP*FFIVKFL 96
           +V+ ++Y VVS  +GR++DE ++   +  P FFIVK L
Sbjct: 876 EVLGRVYGVVSKRRGRVIDEEMK---EGTP-FFIVKAL 909


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 429 EHLESTLEDADGVTPVHGRFYKLASEYY 512
           E +++ ++  DG    HG F  L SEY+
Sbjct: 756 ETMDTVIKLKDGELKAHGLFLSLRSEYF 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,886,438
Number of Sequences: 5004
Number of extensions: 60342
Number of successful extensions: 215
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)