Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0235
(704 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0154 + 5967512-5967658,5968206-5968652,5968766-5968846,596... 129 2e-30
01_05_0085 - 17995800-17995985,17996724-17996823,17996919-179971... 125 3e-29
01_01_0971 + 7669209-7669446,7671259-7671446 34 0.096
07_03_0755 - 21261855-21261945,21262277-21262323,21262819-212630... 31 0.67
05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718 30 1.6
09_02_0622 - 11310941-11311472,11312776-11312813,11312875-113129... 30 2.1
06_01_0036 + 364316-365758 30 2.1
01_02_0129 + 11410345-11410487,11410908-11411014,11414512-114147... 29 2.7
07_03_1396 - 26259614-26259739,26259853-26259939,26260032-262604... 29 3.6
11_06_0066 - 19741883-19742263,19743001-19743231,19743378-197435... 29 4.8
07_03_1257 - 25241194-25242018 29 4.8
09_04_0469 + 17864265-17864789,17865648-17865854,17865936-178661... 28 6.3
01_06_1695 + 39251266-39252390,39252852-39252983,39253560-392537... 28 6.3
07_03_0561 + 19485218-19485242,19485323-19486467,19487354-194874... 28 8.3
04_03_0199 - 12559351-12559433,12559693-12559827,12560260-125604... 28 8.3
03_02_0381 + 7951360-7951509,7952125-7952169,7952625-7952744,795... 28 8.3
>03_02_0154 +
5967512-5967658,5968206-5968652,5968766-5968846,
5969058-5969075,5969552-5969748,5969844-5969943,
5970676-5970861
Length = 391
Score = 129 bits (311), Expect = 2e-30
Identities = 71/181 (39%), Positives = 107/181 (59%), Gaps = 6/181 (3%)
Frame = +3
Query: 39 FLTKKQASEPALAADWAKLEELYNKKLWHQLTLKLQEFVKNPALQRGDNLIQLYNNFLTT 218
F+ ++ + P LA +A L +LY +KLWHQLTLKL F++ PA Q GD LIQLYNNF+T
Sbjct: 5 FVESQREARPELADPYADLADLYQRKLWHQLTLKLDHFLQLPAAQTGDTLIQLYNNFITD 64
Query: 219 FESKINPLSLVEIIAHIVEQYVNKRDAVTFLEKVETKVKMN-----DEALALCKVLQGQI 383
FE+KIN L L QY +K A++FLE V TK++ +E + K+ I
Sbjct: 65 FETKINLLKLAHFAVIASRQYPDKDAAISFLEGVITKLRETKDLRINEPILYVKMQIAAI 124
Query: 384 YIEQLNDYDAAEKIIEHLESTLEDADGVTP-VHGRFYKLASEYYRVRGPTGRYYRAALRY 560
+E+ N + +K+++ +STL+ V P VH Y ++S+Y++ R +Y+ AL Y
Sbjct: 125 NLEKGNQKE-CKKLLDEGKSTLDSMTDVDPTVHASLYWISSQYHKARQEFAEFYKNALLY 183
Query: 561 V 563
+
Sbjct: 184 L 184
>01_05_0085 -
17995800-17995985,17996724-17996823,17996919-17997115,
17997836-17997916,17998046-17998492,17998774-17998920
Length = 385
Score = 125 bits (302), Expect = 3e-29
Identities = 69/181 (38%), Positives = 106/181 (58%), Gaps = 6/181 (3%)
Frame = +3
Query: 39 FLTKKQASEPALAADWAKLEELYNKKLWHQLTLKLQEFVKNPALQRGDNLIQLYNNFLTT 218
++ ++ + P LA +A L +LY +KLWHQLTLKL F++ PA Q GD +IQLYNNF++
Sbjct: 5 YVEAQRQARPDLADAYADLADLYQRKLWHQLTLKLDHFLQLPAAQTGDTIIQLYNNFISD 64
Query: 219 FESKINPLSLVEIIAHIVEQYVNKRDAVTFLEKV-----ETKVKMNDEALALCKVLQGQI 383
FE+KIN L L QY +K A++FLE V ET+ + DE + K+ I
Sbjct: 65 FETKINLLKLAHFAVIASRQYPDKDAAISFLEGVTAKLRETRERRIDEPVLYVKMQIAAI 124
Query: 384 YIEQLNDYDAAEKIIEHLESTLEDADGVTP-VHGRFYKLASEYYRVRGPTGRYYRAALRY 560
+E+ D +K+++ +STL+ V P VH FY ++S+Y++ +Y+ AL Y
Sbjct: 125 NLEK-GDQKECKKLLDEGKSTLDSMTDVDPTVHASFYWISSQYHKACQEFAEFYKNALLY 183
Query: 561 V 563
+
Sbjct: 184 L 184
Score = 31.1 bits (67), Expect = 0.89
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +2
Query: 635 SGVLAPDVYDLGELVAHPILHSL 703
+ +L ++Y+ GEL+AHPI++SL
Sbjct: 207 AALLGDNIYNFGELLAHPIINSL 229
>01_01_0971 + 7669209-7669446,7671259-7671446
Length = 141
Score = 34.3 bits (75), Expect = 0.096
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -1
Query: 626 SLKAISARSVAGRASPPVGAPNVPKRCAVVTASGTTDSVIF 504
++K +SA V GRA P V AP+ P R A T +++F
Sbjct: 33 TVKVVSATPVPGRARPGVAAPSRPPRIAECLIGDETGAIVF 73
>07_03_0755 -
21261855-21261945,21262277-21262323,21262819-21263014,
21263239-21263340,21263602-21263678,21264037-21264236,
21264324-21264681,21265245-21265301,21265434-21266192,
21266287-21266468,21266651-21266813
Length = 743
Score = 31.5 bits (68), Expect = 0.67
Identities = 19/73 (26%), Positives = 37/73 (50%)
Frame = +3
Query: 84 WAKLEELYNKKLWHQLTLKLQEFVKNPALQRGDNLIQLYNNFLTTFESKINPLSLVEIIA 263
+ ++ + K+ W LK + V L+R +++L + T SKI+PL+L + ++
Sbjct: 377 YERIAIMEKKQAWSNKELKYLQGVNERLLKR---VVELKGT-VKTLNSKIDPLTLDDSLS 432
Query: 264 HIVEQYVNKRDAV 302
VEQ + D +
Sbjct: 433 QFVEQCLGSEDVI 445
>05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718
Length = 1412
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +3
Query: 267 IVEQYVNKRDAVTFLEKVETKVKMNDEALALCKVLQGQIYIEQLNDYDAAEKIIEHLEST 446
+ E V VT E V+ + ++D+ + K +Q + E + AAE+ +EH +T
Sbjct: 1338 VQEPMVEDEKTVTTEETVQDPMVVDDKTMTTEKTVQDSMVEEGGTNIAAAEETVEHAAAT 1397
Query: 447 LEDADG 464
E G
Sbjct: 1398 AEALAG 1403
>09_02_0622 -
11310941-11311472,11312776-11312813,11312875-11312926,
11313891-11314270
Length = 333
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 475 FTDDFIS*PRNITESVVPLAVTTAQRFGTLGAPTGGEALPATERADIAF 621
++DD I PR++ + + + T+ T+ A + G+ P TERA F
Sbjct: 189 YSDDHIRVPRDVLRTAITTSATSVHLNITVHAASVGQLPPPTERAYFHF 237
>06_01_0036 + 364316-365758
Length = 480
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 524 SHWPLLPRSASVRWVRRRGVRPYLPLNVLISP 619
+HWP L + + W R G P L + L+SP
Sbjct: 245 AHWPPLMQELAHHWRRAAGPPPNLKVTALVSP 276
>01_02_0129 +
11410345-11410487,11410908-11411014,11414512-11414786,
11415014-11415179,11415681-11415922,11417046-11417141,
11417574-11417761,11418573-11418789
Length = 477
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = -3
Query: 636 EES*SEGDISTFSGR*GLTPRRRTQRTEALRGSNGQWDHGLCNIPRLTYKIVRELESHHQ 457
EE + GD F G +R+T+RT RG + +C+I T + ++ +
Sbjct: 311 EEQSASGDC--FKGH-AAKDKRKTERTVGGRGGEAEVKDIMCHIYTTTKESLKSISPPEM 367
Query: 456 HLRVYFLNVQ 427
L Y LN++
Sbjct: 368 KLLKYLLNIE 377
>07_03_1396 -
26259614-26259739,26259853-26259939,26260032-26260409,
26260497-26260692,26260794-26261032,26261132-26261272
Length = 388
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 132 TLKLQEFVKNPALQR-GDNLIQLYNNFLTTFESKINPLSLVEIIAHI 269
T+ L EF + A Q GDN +Q N +SK+ PLS ++ I++I
Sbjct: 169 TVHLSEFPNDFAAQSVGDNAVQTVGN-----QSKVTPLSWIDCISNI 210
>11_06_0066 -
19741883-19742263,19743001-19743231,19743378-19743530,
19743667-19743726,19743806-19743874,19744639-19744719,
19744818-19744920,19745392-19745534,19745621-19745683,
19745803-19745870,19745974-19746055,19746147-19746260,
19746362-19746570,19746647-19746818
Length = 642
Score = 28.7 bits (61), Expect = 4.8
Identities = 25/97 (25%), Positives = 45/97 (46%)
Frame = +3
Query: 9 VKFAVIDVSDFLTKKQASEPALAADWAKLEELYNKKLWHQLTLKLQEFVKNPALQRGDNL 188
+ AV DV D T ++ S+ + +E +YN+++ LTL ++ + +L+RG +
Sbjct: 114 IPLAVRDVFD--TAREVSDREFLIRVSYME-IYNEEINDLLTLGSEKLPIHESLERGVYV 170
Query: 189 IQLYNNFLTTFESKINPLSLVEIIAHIVEQYVNKRDA 299
L + + E L L E H E +N R +
Sbjct: 171 SGLREEIVNSAEQVFKLLELGEANRHFGETNMNVRSS 207
>07_03_1257 - 25241194-25242018
Length = 274
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = -1
Query: 608 ARSVAGRASPPVGAPNVPKRCAVVTASGTT 519
A VAGR S P A P RC AS TT
Sbjct: 53 APDVAGRDSTPSPASMTPSRCRTTLASTTT 82
>09_04_0469 +
17864265-17864789,17865648-17865854,17865936-17866175,
17866705-17866771,17866872-17867015,17867202-17867297,
17867818-17867975,17868054-17868190,17868551-17868752
Length = 591
Score = 28.3 bits (60), Expect = 6.3
Identities = 29/119 (24%), Positives = 46/119 (38%)
Frame = +3
Query: 108 NKKLWHQLTLKLQEFVKNPALQRGDNLIQLYNNFLTTFESKINPLSLVEIIAHIVEQYVN 287
N K W Q+ +L F+K +G ++ Y+N +F S + P IA + V
Sbjct: 178 NFKEWKQVLQELGRFLKADGAYKGSRSLR-YDNLFDSFPSNLAP------IARFHSKRVL 230
Query: 288 KRDAVTFLEKVETKVKMNDEALALCKVLQGQIYIEQLNDYDAAEKIIEHLESTLEDADG 464
K +VK + L ++LQ + E Y A K + T+ D G
Sbjct: 231 KLKEAVLTSYHRNEVKFTELTLDTFRMLQ-CLEWEPTGSYQIAAKELTE-NGTISDQSG 287
>01_06_1695 +
39251266-39252390,39252852-39252983,39253560-39253748,
39253887-39253954,39254080-39254182,39254387-39254509
Length = 579
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 611 SARSVAGRASPPVGAPNVPKRCAVVTASGTTDSV 510
SA + G A+PP A P A++ +SGTT V
Sbjct: 192 SASAAGGWAAPPAVAMKQPSTAALLYSSGTTGRV 225
>07_03_0561 +
19485218-19485242,19485323-19486467,19487354-19487476,
19487553-19487626,19487886-19487946,19488285-19488370,
19488795-19488864,19489026-19489122,19489342-19489481,
19490225-19490308,19490313-19490346,19491833-19491951
Length = 685
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +3
Query: 120 WHQLTLKLQEFVKNPALQRGDNLIQLYNNFLTTFESKINPLSLVEIIAHIVEQYVNKRDA 299
W+++TL+ F KN + LY T F+S ++ +L+ AHI + R A
Sbjct: 474 WNKVTLRRDSFDKNEM----EFYEALYTQSRTQFDSYVDAGTLMNNYAHIFDLLTRLRQA 529
Query: 300 V 302
V
Sbjct: 530 V 530
>04_03_0199 -
12559351-12559433,12559693-12559827,12560260-12560437,
12560848-12561389,12561398-12564827
Length = 1455
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Frame = +3
Query: 393 QLNDYDAAEKIIEHLESTLEDADGVTPVHGRFYKLASEYYRVRGP----TGRYYRAALRY 560
Q++D + A + L+ E+ +G+ P H Y S Y + P T Y LR
Sbjct: 707 QMSDSNGAPSLDHILDIASEELEGLEPHHNLKYLRISWYNGTKAPTWLSTSLTYLQTLRL 766
Query: 561 VGCAD 575
CA+
Sbjct: 767 ENCAE 771
>03_02_0381 +
7951360-7951509,7952125-7952169,7952625-7952744,
7952823-7952930,7953256-7953363,7953635-7953808,
7954054-7954191,7954643-7954750,7954866-7954973,
7955086-7955234,7955816-7955969,7956143-7956303,
7956391-7956597,7956703-7956886,7956974-7957057,
7957146-7957345,7957476-7957535,7957631-7957835
Length = 820
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 534 GQWDHGLCNIPRLTYKIVRELESHHQHL 451
G W HG+C + Y I+RE + Q L
Sbjct: 429 GDWGHGICILVSTLYLIIREKKFASQKL 456
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,862,563
Number of Sequences: 37544
Number of extensions: 404349
Number of successful extensions: 1164
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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