Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0235
         (704 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_16000| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=5.5e-14)       30   2.1  
SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)                        29   3.7  
SB_46974| Best HMM Match : TPR_1 (HMM E-Value=1.5e-10)                 29   4.9  
SB_21411| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_12127| Best HMM Match : Endonuclease_NS (HMM E-Value=2.9e-35)       29   4.9  
SB_42190| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_41827| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = -3

Query: 465 HHQHLRVYFLNVQLF---SRLHHNHSAVQCIFVLVAPYTEPVLHHSF 334
           HHQH+ +  +N+      +  HH+H  +  I + + P +    HH +
Sbjct: 457 HHQHITITTINILPLLPSNYYHHHHQHITIITINILPSSPSTYHHYY 503


>SB_16000| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=5.5e-14)
          Length = 628

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +3

Query: 57  ASEPALAADWAK----LEELYNKKLWHQLTLKLQEFVKNPALQR 176
           +SE A   +W+K    L E +NK LW +++ +  EF K+ A+ R
Sbjct: 525 SSEKAALKNWSKADVALYEYFNKTLWQRISYEEPEFSKDLAVFR 568


>SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 1981

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 23/74 (31%), Positives = 29/74 (39%)
 Frame = +3

Query: 351  LALCKVLQGQIYIEQLNDYDAAEKIIEHLESTLEDADGVTPVHGRFYKLASEYYRVRGPT 530
            L LCK+  G        DY  A    EH  +TLE   G     GR Y    E Y + G +
Sbjct: 804  LGLCKLKTG--------DYHEALGYFEHQLATLERLPGALLDSGRAYGKRGECYHLLGDS 855

Query: 531  GRYYRAALRYVGCA 572
                R   +Y+  A
Sbjct: 856  NEAIRDYEKYLAAA 869


>SB_46974| Best HMM Match : TPR_1 (HMM E-Value=1.5e-10)
          Length = 466

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 384 YIEQLNDYDAAEKIIEHLESTLEDADGVTPV 476
           Y+E L DY++A KI  + ES   DAD +  +
Sbjct: 430 YVEALKDYESALKIDPNNESLRADADRIRAI 460


>SB_21411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 378 QIYIEQLNDYDAAEKIIEHLESTLEDADGVTPVHGRFYKLASEYYRVRG 524
           ++Y E +ND+  A+ I EHL    E  D    +  +  K   +YY++ G
Sbjct: 168 EMYNEAVNDFQKAKSINEHLHKVQEGLDRAQRLLKQSQK--RDYYKILG 214


>SB_12127| Best HMM Match : Endonuclease_NS (HMM E-Value=2.9e-35)
          Length = 1577

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +3

Query: 321 ETKVKMNDEALALCKVLQGQIY 386
           +T++++N+E +  CK+L G +Y
Sbjct: 758 QTRIRINEEVVLACKLLNGHLY 779


>SB_42190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = -2

Query: 385 YICPCSTLHRASASSFI-LTFVSTFSRNVTASLLLTYCSTI*AMISTNDRGFILLSKVVK 209
           ++CP + LH+  +S ++ L F          + L T C T+  +I    R ++  +    
Sbjct: 148 FLCPTNILHKIGSSEWLGLPFNKHTKLKYARNFLPTSCDTLHPLIGLGGRTYLSTTHDTL 207

Query: 208 KLLYNCMRLSPL 173
           +     + L PL
Sbjct: 208 QTTQGALDLRPL 219


>SB_41827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 862

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 626 SLKAISARSVAGRASPPVGAPNVPKRCAVVTASGT 522
           S  ++S+++      P +GA  +P   AVVTA+GT
Sbjct: 138 SCSSLSSQNSTAAQPPYIGASQLPSIGAVVTANGT 172


>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 525 DHGLCNIPRLTYKIVRELESHHQHLRVYFLNVQLFSRLHHNHSAV 391
           +H L  +   T+K++  + +H Q    Y  + QL  R HH H  V
Sbjct: 386 NHKLLTVIINTHKLLIVITTHPQVTHRYHQHPQLTHRYHHQHPQV 430


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,641,661
Number of Sequences: 59808
Number of extensions: 475048
Number of successful extensions: 4601
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4598
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)