Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0235
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49130-6|CAA88971.1|  387|Caenorhabditis elegans Hypothetical pr...   109   1e-24
AF188750-1|AAF00547.1|  293|Caenorhabditis elegans putative tyro...    33   0.26 
AC024882-9|AAF60930.2|  341|Caenorhabditis elegans Hypothetical ...    30   1.4  
Z81098-3|CAB03179.1|  131|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U41036-4|AAT92061.1| 1018|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U41036-3|AAL06055.1| 1030|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U41036-2|AAA82385.2| 1086|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z30662-6|CAE17936.1|  295|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AC024791-24|AAF60656.1|  627|Caenorhabditis elegans Hypothetical...    28   7.5  
AC024882-8|AAF60931.2|  340|Caenorhabditis elegans Seven tm rece...    27   9.9  

>Z49130-6|CAA88971.1|  387|Caenorhabditis elegans Hypothetical
           protein T06D8.8 protein.
          Length = 387

 Score =  109 bits (263), Expect = 1e-24
 Identities = 68/192 (35%), Positives = 105/192 (54%), Gaps = 12/192 (6%)
 Frame = +3

Query: 36  DFLTKK-QASEPALAADWAKLEELYNKKLWHQLTLKLQEFVKNPALQRGDNLIQLYNNFL 212
           D+L  K  A+   LA DW  L+EL+ KKLWHQLT+  +  VK P      ++ + Y  F+
Sbjct: 5   DYLNGKLAAANGPLADDWKNLKELWEKKLWHQLTVLTRSLVKKPQFVASTDMHEFYRLFV 64

Query: 213 TTFESKINPLSLVEIIAHIVEQYV--NKRDAVTFLEKVETKVKMNDEALALCKVLQGQIY 386
             +E ++NPL LVEI   I +     +K+ ++ FL K+   +  N + +A+ ++  G+I 
Sbjct: 65  AEWELRVNPLQLVEICISIAQNIATKDKQKSMEFLSKIGNVI--NKDKIAVARLHTGEIE 122

Query: 387 IEQLNDYDAAEKIIE------HLESTLEDAD---GVTPVHGRFYKLASEYYRVRGPTGRY 539
             +L + D   +II+       ++ST  + D   GVT VH  FY+++S Y R  G    Y
Sbjct: 123 -ARLENKDKNGQIIDLKSIRTQIDSTQHEVDSLVGVTEVHAPFYRVSSLYLREVGDFAGY 181

Query: 540 YRAALRYVGCAD 575
           YR ALRY+G  D
Sbjct: 182 YREALRYLGVED 193



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +2

Query: 635 SGVLAPDVYDLGELVAHPILHSL 703
           + +L  +V++ GEL+AHPIL SL
Sbjct: 212 AALLGENVHNFGELLAHPILKSL 234


>AF188750-1|AAF00547.1|  293|Caenorhabditis elegans putative
           tyrosine kinase receptorW04G5.6B protein.
          Length = 293

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 204 NFLTTFESKINPLSLVEIIAHIVEQYVNKRDAVTFLEKVE-TKVKMNDEALALCK 365
           N + + E   N LSLV ++  IV +YV   D + FL K +  K  +  +  +LCK
Sbjct: 93  NVMCSMEKHPNILSLVGVVTMIVTEYVEDGDLLKFLRKCKFDKDSVKLDEKSLCK 147


>AC024882-9|AAF60930.2|  341|Caenorhabditis elegans Hypothetical
           protein Y9C9A.5 protein.
          Length = 341

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -3

Query: 495 TYKIVRELESHHQHLRVYFLNVQLFSRL-HHNHSAVQCIFVLVA-PYTEPVLH 343
           TYK+VREL  H +    Y L  QLF  L       +  +F+ +   +T P+LH
Sbjct: 225 TYKLVRELSKHGESEYTYKLQSQLFRALVAQAFIPITFLFLPIGILFTAPLLH 277


>Z81098-3|CAB03179.1|  131|Caenorhabditis elegans Hypothetical
           protein K07A12.3 protein.
          Length = 131

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 51  KQASEPALAADWAKLEELYNKKLWHQLTLK 140
           + A  PA+ ADWAKL++    K +  L++K
Sbjct: 46  RSADIPAIKADWAKLQKFIETKQYVNLSIK 75


>U41036-4|AAT92061.1| 1018|Caenorhabditis elegans Hypothetical
           protein T14E8.1c protein.
          Length = 1018

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 267 IVEQYVNKRDAVTFLEKVETKVKMND 344
           I+ +Y+ K D  +F+E VE  +KM D
Sbjct: 809 IITEYMAKGDLKSFIENVENTIKMRD 834


>U41036-3|AAL06055.1| 1030|Caenorhabditis elegans Hypothetical
           protein T14E8.1b protein.
          Length = 1030

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 267 IVEQYVNKRDAVTFLEKVETKVKMND 344
           I+ +Y+ K D  +F+E VE  +KM D
Sbjct: 809 IITEYMAKGDLKSFIENVENTIKMRD 834


>U41036-2|AAA82385.2| 1086|Caenorhabditis elegans Hypothetical
           protein T14E8.1a protein.
          Length = 1086

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 267 IVEQYVNKRDAVTFLEKVETKVKMND 344
           I+ +Y+ K D  +F+E VE  +KM D
Sbjct: 809 IITEYMAKGDLKSFIENVENTIKMRD 834


>Z30662-6|CAE17936.1|  295|Caenorhabditis elegans Hypothetical
           protein T16H12.11 protein.
          Length = 295

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 7/120 (5%)
 Frame = +3

Query: 132 TLKLQEFVKNPALQRGDNLIQLYNNFLTTFESKINPLSLV-EIIAHIVEQYVNKRDA--- 299
           T +++  ++   ++     I ++N  +  F S  N    V E IAH +E+  NK+DA   
Sbjct: 161 TKRIEHVLRQDIIREIGVAIDVHNLKIDDFRSHSNNTERVAEGIAHAIEESKNKQDAGNQ 220

Query: 300 ---VTFLEKVETKVKMNDEALALCKVLQGQIYIEQLNDYDAAEKIIEHLESTLEDADGVT 470
              V  L K  +  +   E     + L  +   E L+D D +   +   +S+  DA  ++
Sbjct: 221 LKHVPVLSKQMSVRRWYREHYGDPQALSDESDEESLSDGDNSSLFVGTADSSSRDASDIS 280


>AC024791-24|AAF60656.1|  627|Caenorhabditis elegans Hypothetical
           protein Y47G6A.4 protein.
          Length = 627

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
 Frame = +2

Query: 161 SGPAEGRQPHTVVQ*LFDHLRKQN-KSPII 247
           +GPA+G +P+ V + L  HL KQ+ KSPI+
Sbjct: 279 NGPADGCEPYEVFEWL-QHLLKQHPKSPIL 307


>AC024882-8|AAF60931.2|  340|Caenorhabditis elegans Seven tm
           receptor protein 168 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 495 TYKIVRELESHHQHLRVYFLNVQLFSRL 412
           +YK+VREL  H +    Y L  QLF  L
Sbjct: 225 SYKLVRELPKHGESEYTYKLQSQLFKAL 252


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,029,788
Number of Sequences: 27780
Number of extensions: 345123
Number of successful extensions: 1101
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)