Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0235
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    24   1.2  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              23   2.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   2.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   2.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.5  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   6.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.5  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -1

Query: 326 RFHLLKECDSISLVDILF-HDMSNDLNQ**GIYFAFEGGQKVIVQLYEVVSPLQGR 162
           RF L+ +C  ++     F +   ND  +  GIYF  E  QK+ +       P + R
Sbjct: 63  RFKLVTDCIFVTSEPGYFLYTSKNDNEEVCGIYFLAEPDQKIEINFITFDIPCEHR 118


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = -2

Query: 232 ILLSKVVKKLLYNCMRLSPL 173
           ++ +++  KLL NC+R+SP+
Sbjct: 19  VIPAELTAKLLGNCVRVSPV 38


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +3

Query: 636 LECWLRMYMIWVNWWLTQSYI 698
           + C + + + WV++WL QS +
Sbjct: 250 IPCCMLVIVSWVSFWLDQSAV 270


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +3

Query: 636 LECWLRMYMIWVNWWLTQSYI 698
           + C + + + WV++WL QS +
Sbjct: 250 IPCCMLVIVSWVSFWLDQSAV 270


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +3

Query: 474 VHGRFYKLASEYYRVR 521
           +HG F +    YY++R
Sbjct: 578 IHGNFIESLGNYYKIR 593


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 66  PALAADWAKLEELYNK 113
           P LAA+ AKLEE+  K
Sbjct: 287 PKLAANRAKLEEIAGK 302


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 511 TESVVPLAVTTAQRFGTLGAPTGGEALPATERADIA 618
           T++  P  VTT     TL A +     PAT  A +A
Sbjct: 211 TDASTPATVTTTGATTTLPAASATGTGPATPSAVVA 246


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,792
Number of Sequences: 438
Number of extensions: 5026
Number of successful extensions: 28
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)