Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0233
         (797 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    23   2.8  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    23   2.8  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    23   3.7  

>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 148 QKLHYIYTRIQNLKEQVKQQNNQPSTSKTDVSIKNLERN 264
           Q   Y   R Q+ K    QQNN P  S   V++  L R+
Sbjct: 89  QNHRYKTKRAQHEKGMHDQQNNNPLPSPRRVAVPVLVRD 127


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 365 AKEENYYDV*NVKKKEFYLRITQL 436
           + EEN   + N+KK +F L++ QL
Sbjct: 67  SSEENCVSMSNLKKLKFLLKLGQL 90


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 323 FSKVFISFIGCPSQYVFLGMFLSKFFIDTSVLDVE 219
           F  VF   I   S Y F  + L K  ++  ++D+E
Sbjct: 101 FVNVFFWVIILMSNYAFTRIILLKSVLEIVIIDIE 135


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.310    0.130    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,300
Number of Sequences: 336
Number of extensions: 3367
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)