Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0233
(797 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces pombe... 33 0.047
SPAC23C11.17 |||mitochondrial inner membrane protein involved in... 31 0.19
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 29 0.58
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 29 1.0
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S... 29 1.0
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha... 28 1.8
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 28 1.8
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 27 3.1
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S... 27 3.1
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|... 27 4.1
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|... 27 4.1
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 26 5.4
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch... 26 7.2
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 25 9.5
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 25 9.5
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 9.5
>SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 281
Score = 33.1 bits (72), Expect = 0.047
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Frame = -3
Query: 714 IYTHFCALKQLCLCIVYRHYNIDCSVLVFT--IF*RIHWL*SYDFIIFNSI*CLFYWSNE 541
+++ F +L LC I+ + Y D +VL+ +F ++ +L F N++ LFY
Sbjct: 12 VFSFFRSLDMLCYAIIAQQYFQDPTVLLLLLKVFVQLSYLTPKPFSQLNAL-PLFYP--- 67
Query: 540 FIFISFWITYLMLQFFNIPKA 478
+ ++F I+ ++ FFN+P A
Sbjct: 68 -LLLNFLISLMVRMFFNLPTA 87
>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
potassium ion transport|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 31.1 bits (67), Expect = 0.19
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Frame = +1
Query: 79 KLYQENECGKLNQQ--NKVETGVLKQKLHYIYTRIQNLKEQV----KQQNNQPSTSKTDV 240
+LY E +Q NK +L+++ I +++ E KQ +TSK V
Sbjct: 411 ELYHETVVDMPTKQVSNKERLEILREQEELIEEEAEHVAEHPDLAKKQTEENKATSKPAV 470
Query: 241 SIKNLERNIPKN 276
S K+ E NIPKN
Sbjct: 471 SAKSPESNIPKN 482
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 29.5 bits (63), Expect = 0.58
Identities = 13/39 (33%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Frame = +1
Query: 172 RIQNLKEQVKQQNNQPSTSKTDVSI--KNLERNIPKNTY 282
++++L+EQ+ +Q++QPST T + I K R P++ +
Sbjct: 778 KLRDLREQMSRQSSQPSTVSTILQIPDKKFHRPFPRHLH 816
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 28.7 bits (61), Expect = 1.0
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 46 LKKAGLTTDEIK--LYQENECGKLNQQNKVETGVLKQKLHYIYTRIQNLKEQVKQQNNQP 219
L K GL DE L ++N N ++ V++ LKQ L +I LK++ + P
Sbjct: 513 LVKPGLGVDEALAVLAKQNNLTDTNLKDAVDS--LKQSLSFINLDASALKDREPSEKELP 570
Query: 220 STSK 231
ST+K
Sbjct: 571 STAK 574
>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
Spo6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 175 IQNLKEQVKQQNNQPSTSKTDVSIKNLERNIPKNTYC-DGHP 297
IQN+ E+VK+ P + KT+ S K L + T C D +P
Sbjct: 23 IQNINEEVKRDIQNPLSYKTETSDKELCQTAACATSCSDWYP 64
>SPCC1322.14c |vtc4||vacuolar transporter chaperone
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +1
Query: 142 LKQKLHYIYTRIQNLKEQVKQQNNQPSTSKTDVS--IKNLERNIPK 273
L + Y Y LK+++K++N+Q S+ D S ++ LE+ + K
Sbjct: 11 LMYEYKYSYVNYDKLKKEIKRRNDQGGWSEEDESDFVELLEKELDK 56
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +1
Query: 502 QHKISDPER--NKDKLIGPVKKTLYTIKNNKIVRLEPMDSSENSEDEYRAVNIVVPINNA 675
++K PE+ +K+K V+K I++ + +E D +EN DE A+ + + +
Sbjct: 29 KNKKRKPEKKDDKEKSSKKVQKKNKVIESLNEMEVEMEDENENENDEQEAIQYYINVESQ 88
Query: 676 EA 681
+A
Sbjct: 89 DA 90
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +1
Query: 538 KLIGPVKKTLYTIKNNKIVRLE 603
+LIG V K L+ +K+ K+V+L+
Sbjct: 570 RLIGQVSKELWEVKDKKVVKLD 591
>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 582
Score = 27.1 bits (57), Expect = 3.1
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -2
Query: 433 LCYSEIKFFLFYVLNVVIVFFFCSKVK---CRP*DAQRDNSLK 314
L YSE F+LF V N+ I F F S + C+P + ++N K
Sbjct: 156 LSYSENPFYLFEVKNLSISFHFESPQQVEPCQPVNPFKENPQK 198
>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 287
Score = 26.6 bits (56), Expect = 4.1
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +1
Query: 526 RNKDKLIGPVKKTLYTIKNNKIVRLEPMDSSENSEDEYRAVNIVVPINNAEAQLLE 693
R ++G V ++ IK + E MDS E+ DE++ V + N QLLE
Sbjct: 110 RKLTDILGGVLFVIFGIKMLMEAK-EVMDSKESMSDEFQNVRNEIAANGPIDQLLE 164
>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 781
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/64 (17%), Positives = 30/64 (46%)
Frame = +1
Query: 421 QNNTVILDNSNRKPVNRPGSLWDVKELQHKISDPERNKDKLIGPVKKTLYTIKNNKIVRL 600
+ N ++L N +P++ ++ SDP+ + + + T+K++ ++
Sbjct: 543 EQNRLMLSQENDEPISSALDTVKPDGIELYSSDPDTSVKSITNKATNEITTLKSDDSAKM 602
Query: 601 EPMD 612
+P+D
Sbjct: 603 QPLD 606
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 26.2 bits (55), Expect = 5.4
Identities = 22/73 (30%), Positives = 35/73 (47%)
Frame = +1
Query: 478 SLWDVKELQHKISDPERNKDKLIGPVKKTLYTIKNNKIVRLEPMDSSENSEDEYRAVNIV 657
S D+ EL HKI+ +K + K L T+ NK +E + N DE++A+ ++
Sbjct: 82 STHDISEL-HKITPILASKFLELEEQNKCLNTV--NKY--MEVVKKYGNKADEFKALKLL 136
Query: 658 VPINNAEAQLLEG 696
P + LEG
Sbjct: 137 TPEEGEIYEYLEG 149
>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
3|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +1
Query: 142 LKQKLHYIYTRIQNLKEQVKQQNNQPSTSKTDVSIKNLERNIPKNTYCD 288
+ Q+LHY T +L +Q Q+ + + KN+ +N KN + +
Sbjct: 412 ISQELHYFKTVGWSLVDQWDQKLEEKEDATECFFYKNVSQNTAKNNFLE 460
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +1
Query: 472 PGSLWDVKELQHKISDPER---NKDKLIGPVKKTLYTIKNNKIVRLEPMDSSENSEDEYR 642
P + ++ +LQ +S +R +++ I +K L +I+NN + + N + E
Sbjct: 847 PSAELEISKLQLDVSACDRLVAGEERRILQLKSDLKSIRNNNERKRNLQNKISNMDKEVE 906
Query: 643 AVNI 654
A+NI
Sbjct: 907 AINI 910
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 106 KLNQQNKVETGVLKQKLHYIYTRIQNLKEQVKQQNNQP 219
KL++ K + +L QKL+ I R L+ +++ QP
Sbjct: 703 KLSENRKEQCKILTQKLYTIVFRCNELQSVLRECVTQP 740
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/33 (27%), Positives = 22/33 (66%)
Frame = +1
Query: 487 DVKELQHKISDPERNKDKLIGPVKKTLYTIKNN 585
D++ L++K+S+ E ++ L+ ++ + +KNN
Sbjct: 991 DIEHLKNKVSEVEVERNALLASNERLMDDLKNN 1023
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.310 0.130 0.366
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,797,051
Number of Sequences: 5004
Number of extensions: 52653
Number of successful extensions: 144
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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