Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0233
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0114 + 9294747-9294788,9294883-9294996,9295066-9295173,929...    34   0.11 
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809...    29   5.7  
05_04_0273 + 19632430-19632762,19633109-19633177,19633318-196333...    28   7.5  
02_02_0620 + 12210812-12210997,12212397-12212474,12212744-122128...    28   7.5  
01_05_0265 + 20188160-20188211,20188291-20189019,20189103-201892...    28   7.5  
07_01_0584 + 4345134-4345237,4346165-4346267,4346397-4346466,434...    28   9.9  
03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,970...    28   9.9  
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162...    28   9.9  

>10_05_0114 +
           9294747-9294788,9294883-9294996,9295066-9295173,
           9295774-9296145,9296584-9296652,9296754-9296825,
           9297070-9297198,9297690-9297770,9298622-9298807,
           9299135-9299860
          Length = 632

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = -1

Query: 323 FSKVFISFIGCPS-QYVFLGMFLSKFFIDTSVLDVEG*LFCCFTCSLRFCILV*I*CNFC 147
           F   F+ F+G    QYV +G++     ID  +L V G  FC    +  FC+LV I C  C
Sbjct: 28  FYVFFVPFVGRSELQYVLMGLYTP--LIDLHLLSVWGDFFC----TTPFCVLVGIICGEC 81

Query: 146 FNTPVSTLFC 117
               +  + C
Sbjct: 82  LGEILHYITC 91


>04_04_1188 +
           31579833-31579914,31580001-31580176,31580822-31580923,
           31581015-31581245,31581821-31581922,31582092-31582184,
           31582275-31582379,31582455-31582514,31582621-31582698,
           31582778-31582924,31583011-31583109,31583178-31583267,
           31583360-31583451,31583529-31583646,31583783-31583871,
           31583998-31584088,31584203-31584294,31584442-31584749,
           31584866-31584897
          Length = 728

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +1

Query: 103 GKLNQQNKVETGVLKQKLHYIYTRIQNLKEQVKQQNNQPSTSKTDVS 243
           GK N ++++E  V  +K   +  ++   KE+ K+   QP   K + S
Sbjct: 28  GKRNAEDEIEKAVSAKKQKTVREKVVPSKEEAKKVKKQPPPKKVESS 74


>05_04_0273 +
           19632430-19632762,19633109-19633177,19633318-19633374,
           19633534-19633597,19633887-19634102,19634761-19634803,
           19635267-19635345,19635467-19635559
          Length = 317

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +1

Query: 481 LWDVKELQ-HKIS--DPERNKDKLIGPVKKTLYTIKNNKIVR 597
           L +VKEL  HK +  D  R  D++ GP  K LYTI    I R
Sbjct: 273 LANVKELNSHKQTREDTLRKADEIFGPDNKDLYTIFEGLITR 314


>02_02_0620 +
           12210812-12210997,12212397-12212474,12212744-12212848,
           12212998-12213022,12213214-12213266,12213523-12213635,
           12213777-12213801,12214560-12214601,12214666-12214726,
           12216027-12216043,12217143-12217257,12217431-12218659
          Length = 682

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 115 QQNKVETGVLKQKLHYIYTRIQNLKEQVKQQNNQPSTSKTDVSIKNL 255
           Q + +E GV K  LH+IYT   +   Q  Q  ++ S  +  V  ++L
Sbjct: 534 QVDDMEPGVFKSLLHFIYTDSLDTMAQEDQSRDEASEEEDLVMAQHL 580


>01_05_0265 +
           20188160-20188211,20188291-20189019,20189103-20189231,
           20189857-20189938,20190034-20190166,20190269-20190340,
           20190478-20190573,20190651-20190764,20190838-20191050,
           20191144-20191242,20191328-20191488,20191589-20191685,
           20191828-20191989,20192068-20192148,20192242-20192320,
           20192414-20192550,20192638-20192688,20192776-20192844,
           20193583-20193700,20194142-20194197
          Length = 909

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +1

Query: 160 YIYTRIQNLKEQVKQQNNQPSTSKTDVSIKNL 255
           +I TRI NLK  V  +N  PS  +  VSIK +
Sbjct: 240 HIQTRIYNLKSSVCLRNLNPSDIEKMVSIKGM 271


>07_01_0584 +
           4345134-4345237,4346165-4346267,4346397-4346466,
           4346552-4346590,4346684-4346801,4346894-4346951,
           4347031-4347095,4347281-4347341,4347678-4347779,
           4348005-4348070,4348399-4348443,4348540-4348797,
           4349289-4349501,4350103-4350411,4350461-4350613
          Length = 587

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 561 LFYWSNEFIFISFWITYLMLQFFNIPKAAWTIYWF 457
           LF W   F  +   I   +++FF +  AAW I+ F
Sbjct: 451 LFNWLVTFSLVMIVIARFVIKFFLLEVAAWVIFIF 485


>03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,
            9700145-9700235,9700698-9700759,9701256-9702962,
            9703789-9703870,9703972-9704057,9704855-9704968,
            9705113-9705163,9705261-9705358,9707084-9707546
          Length = 1367

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
 Frame = +1

Query: 481  LWD-VKELQHKISDPERNKDKLIGPVKKTLYTIKNNKIVRLEPMDS-----SENSEDEYR 642
            +W  + EL+ K+SD  + ++K    +++ +  +++ KI+ +E  DS     S NS   +R
Sbjct: 1096 IWSQLDELEKKLSDEVKIRNKAERRLRRAIKKLESLKILDVELSDSSIGSLSSNSCSGHR 1155

Query: 643  AVNIVVPINN 672
            A      +NN
Sbjct: 1156 APETEADVNN 1165


>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
            1625603-1625887,1626016-1626030,1626339-1626419,
            1626909-1627322,1627423-1627719,1627801-1629864
          Length = 3057

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 175  IQNLKEQVKQQNNQPSTSKTDVSIKNLERNIPKNTYCD 288
            I  +KE+ +++N   S    +VS KN   ++ +NT  D
Sbjct: 2042 ITEIKEETEEENGPNSGGTLEVSAKNYNEDVHENTEKD 2079


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.310    0.130    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,872,648
Number of Sequences: 37544
Number of extensions: 263535
Number of successful extensions: 442
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)