Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0233
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32520| Best HMM Match : G_glu_transpept (HMM E-Value=4.9e-12)       36   0.050
SB_57289| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.037)          33   0.35 
SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)               31   1.1  
SB_24348| Best HMM Match : TPR_2 (HMM E-Value=2.1e-17)                 31   1.4  
SB_16794| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_1611| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_21069| Best HMM Match : KE2 (HMM E-Value=0.59)                      29   3.3  
SB_8793| Best HMM Match : C1_1 (HMM E-Value=0.21)                      29   3.3  
SB_53464| Best HMM Match : HET (HMM E-Value=1.9)                       29   4.4  
SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07)                     29   4.4  
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     29   4.4  
SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  

>SB_32520| Best HMM Match : G_glu_transpept (HMM E-Value=4.9e-12)
          Length = 1225

 Score = 35.5 bits (78), Expect = 0.050
 Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
 Frame = +1

Query: 145 KQKLHYIYTRIQNLKE--QVKQQNNQPSTSKTDVSIKNLERNIPKN 276
           KQK+  +  R ++LK    + Q+NN    SK +V ++N++ N+PKN
Sbjct: 655 KQKVRMMEGRRRHLKRFHWMVQKNNNKRLSKINVEVRNVQENVPKN 700


>SB_57289| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.037)
          Length = 396

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 20/65 (30%), Positives = 38/65 (58%)
 Frame = +1

Query: 73  EIKLYQENECGKLNQQNKVETGVLKQKLHYIYTRIQNLKEQVKQQNNQPSTSKTDVSIKN 252
           E +L +E E    N + K ETG++++K   +   I + K ++++Q+N+    K    IK+
Sbjct: 110 ERRLREEKEA---NLRLKGETGIMRKKFTSLQKEIDDYKAEIQRQHNE--NVKLQGVIKS 164

Query: 253 LERNI 267
           LE++I
Sbjct: 165 LEKDI 169


>SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)
          Length = 3561

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 421  QNNTVILDNSNRKPVNRPGSLWDVKEL 501
            +N T+ILDN+NR+P N     WD  E+
Sbjct: 1122 KNRTLILDNNNRQPQNTVSVDWDRPEV 1148


>SB_24348| Best HMM Match : TPR_2 (HMM E-Value=2.1e-17)
          Length = 463

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = +1

Query: 67  TDEIKLYQENECGKLNQQNKVETGVLKQKLHYIYTRIQNLKEQVKQQNNQPSTSKTDVSI 246
           T   K  +EN   +   QNK++  V ++ +        N K ++K QN     SK +   
Sbjct: 98  TSTTKFNRENSVPRTQTQNKLKDTVKEEPV-----SSTNKKSKIKPQNRMSQESKANKEK 152

Query: 247 KNLERNIPKNTY 282
           K ++   PKNTY
Sbjct: 153 KTVD---PKNTY 161


>SB_16794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1407

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/68 (26%), Positives = 33/68 (48%)
 Frame = +1

Query: 70   DEIKLYQENECGKLNQQNKVETGVLKQKLHYIYTRIQNLKEQVKQQNNQPSTSKTDVSIK 249
            D I+ Y+E +     +++K      KQ+     +R+QN  +  + ++ +    K + SIK
Sbjct: 966  DTIRQYEEKQLKAQQERSKKRLEFTKQE-----SRLQNQLDYERSRDTKSQVKKLETSIK 1020

Query: 250  NLERNIPK 273
            N E  I K
Sbjct: 1021 NDEEEIKK 1028


>SB_1611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/67 (25%), Positives = 36/67 (53%)
 Frame = +1

Query: 49  KKAGLTTDEIKLYQENECGKLNQQNKVETGVLKQKLHYIYTRIQNLKEQVKQQNNQPSTS 228
           +K+ + T + K+ Q  +C     + KV+T   K K+H   ++IQ  K +++ + ++  TS
Sbjct: 202 RKSKVQTSKSKI-QTRKCKVQTGKCKVQTS--KSKIHASKSKIQTRKSKIQTRKSKVQTS 258

Query: 229 KTDVSIK 249
           K  +  +
Sbjct: 259 KCKIQTR 265


>SB_21069| Best HMM Match : KE2 (HMM E-Value=0.59)
          Length = 341

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/67 (25%), Positives = 36/67 (53%)
 Frame = +1

Query: 49  KKAGLTTDEIKLYQENECGKLNQQNKVETGVLKQKLHYIYTRIQNLKEQVKQQNNQPSTS 228
           +K+ + T + K+ Q  +C     + KV+T   K K+H   ++IQ  K +++ + ++  TS
Sbjct: 202 RKSKVQTSKSKI-QTRKCKVQTGKCKVQTS--KSKIHASKSKIQTRKSKIQTRKSKVQTS 258

Query: 229 KTDVSIK 249
           K  +  +
Sbjct: 259 KCKIQTR 265


>SB_8793| Best HMM Match : C1_1 (HMM E-Value=0.21)
          Length = 260

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = -1

Query: 290 PSQYVFL-GMFLSKFFIDTSVLDVEG*LFCCFTCSLRFCILV*I*CNFCFNTPVS--TLF 120
           PS   FL   +L+K F+D     VE  +F  F C LRFC      C FC +       LF
Sbjct: 105 PSHESFLIAQYLTKLFVDI----VEFFVFVAFLCLLRFCAR----CAFCAHCAFMFVALF 156

Query: 119 C 117
           C
Sbjct: 157 C 157


>SB_53464| Best HMM Match : HET (HMM E-Value=1.9)
          Length = 251

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +1

Query: 88  QENECGKLNQQNKVETGVLKQKLHYIYTRIQNLKEQVKQQNNQP-STSKTDVSIKNLERN 264
           QEN+    NQ+N VET   + ++      + N +  V Q+N+   S  + DV   N + N
Sbjct: 171 QENKVDPSNQENDVETSNQQNEVD-----LSNQQSNVNQKNDVGFSNQQNDVDPSNQQNN 225

Query: 265 IPKNTYCDGHPMND 306
           +    +CD    N+
Sbjct: 226 V---NFCDEQHDNE 236


>SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07)
          Length = 1447

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/70 (28%), Positives = 38/70 (54%)
 Frame = +1

Query: 46  LKKAGLTTDEIKLYQENECGKLNQQNKVETGVLKQKLHYIYTRIQNLKEQVKQQNNQPST 225
           +KK      + K+ Q+ +  KL    K+E  + +QKL     +I++L+E+ K   +Q + 
Sbjct: 522 IKKEKEQLKKNKVAQDEQGKKL----KMEVSMTRQKLQEAEAKIRSLQEECKNLESQLNM 577

Query: 226 SKTDVSIKNL 255
           + TD  +KN+
Sbjct: 578 ANTD--LKNI 585


>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 4303

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
 Frame = +1

Query: 82   LYQENECGKLNQQNKVETGVLKQK----LHYIYTRIQNLKEQVKQQNNQPSTSKTDVSIK 249
            ++QE  CG + QQ    TGV  Q+    L  +    Q ++ +V +Q   PS  + D S +
Sbjct: 831  MHQELTCGTVQQQQFSSTGVQPQQPVSGLRSVGVENQPVQRRVTEQKVSPSEPEADNSAQ 890

Query: 250  NL 255
             L
Sbjct: 891  AL 892


>SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1507

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/72 (22%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = +1

Query: 4    EFSRAEEEVRHLXLLKKAGLTTDEIKLYQ-ENECGKLNQQNKVETGVLKQKLHYIYTRIQ 180
            E  +   E++ L  L +   ++ E  +   +    ++++ +K E   LKQ+L  + T+++
Sbjct: 1089 EIDKGRAEIKELGSLLETEQSSHEKTIKDTQKHLSRMDRADK-ENSELKQELALLKTKLK 1147

Query: 181  NLKEQVKQQNNQ 216
             +KE++ +Q  Q
Sbjct: 1148 KVKEELARQREQ 1159


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.310    0.130    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,603,482
Number of Sequences: 59808
Number of extensions: 345874
Number of successful extensions: 1036
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)