Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0233
         (797 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    30   0.095
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    27   0.89 
AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein p...    26   1.2  
AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.      26   1.6  
AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.           25   2.0  
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            25   2.7  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    23   8.3  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 29.9 bits (64), Expect = 0.095
 Identities = 21/68 (30%), Positives = 29/68 (42%)
 Frame = +1

Query: 490  VKELQHKISDPERNKDKLIGPVKKTLYTIKNNKIVRLEPMDSSENSEDEYRAVNIVVPIN 669
            VK LQ KI+   +  DKL   + K    IK ++    +  D   + EDE  A    +   
Sbjct: 895  VKVLQTKINGLGKQIDKLSANISKLTVEIKTSERNVQKSKDKINSMEDEVEAAQSAIRKG 954

Query: 670  NAEAQLLE 693
            N E   LE
Sbjct: 955  NDERTQLE 962


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
           protein.
          Length = 3325

 Score = 26.6 bits (56), Expect = 0.89
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +1

Query: 154 LHYIYTRIQNLKEQVKQQNNQPSTSKTDVSIKNLE 258
           LHY+Y R++++ E+     + P      + I  +E
Sbjct: 405 LHYLYNRLRDISEETSALPSHPRRRSNSLPIPQIE 439


>AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein
           protein.
          Length = 455

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +1

Query: 91  ENECGKLNQQNKVETGV-LKQKLHYIYTRIQNLKEQVKQQNNQPSTSKTDVSIKNLE 258
           +NE  ++ QQ    T + +  +L  +  + Q  ++Q  Q   QP  S + VS++N+E
Sbjct: 94  DNEKLRVEQQETHTTLIAISAQLRDLQQKNQMKRQQQHQPPQQPGPSTSAVSLRNVE 150


>AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.
          Length = 565

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +1

Query: 46  LKKAGLTTDEIKLYQENECGKLN---QQNKVETGVLKQKLHYIYTRIQNLKEQVKQQNNQ 216
           +K  G  T  + +   +E G L+   Q+  +   +LK   H + + + +L  ++     +
Sbjct: 321 IKGTGSWTQMLLITDYHELGSLHDYLQKRVLNPHMLKTLAHSLASGVAHLHTEIFGTPGK 380

Query: 217 PSTSKTDVSIKNL 255
           PS +  D+  KN+
Sbjct: 381 PSIAHRDIKSKNI 393


>AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.
          Length = 1459

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
 Frame = +1

Query: 502 QHKISDPERNKDKLIGPVKKTLYTIKNNKIVRLEPMDSSE----------NSEDEYRAVN 651
           Q++++    N+D   G ++  L  + +NKI +LE    S+          +++ E  A +
Sbjct: 351 QNQLTSAWVNRDTFAGLIRLVLLNLASNKITKLESEIFSDLYTLQILNLRHNQLEIIAAD 410

Query: 652 IVVPINNAEAQLLEGTKM 705
              P+NN    LL   K+
Sbjct: 411 TFSPMNNLHTLLLSHNKL 428


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 13/56 (23%), Positives = 24/56 (42%)
 Frame = +1

Query: 154  LHYIYTRIQNLKEQVKQQNNQPSTSKTDVSIKNLERNIPKNTYCDGHPMNDIKTLE 321
            L   Y ++     QV +  +  +    ++   ++ER I +  +   HP ND K  E
Sbjct: 1689 LKVTYQQLSGQPVQVLEYESPDTVRVREILYDDIERPILQTKWTKVHPENDAKMFE 1744


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +1

Query: 46  LKKAGLTTDEIKLYQEN--ECGKLNQQNKVETGVLKQKLHYIYTRIQNLKEQV 198
           LK+     D IK  +    E  ++  +   + G  K+++H + + + N++EQ+
Sbjct: 442 LKRQEKLIDHIKTSRLGLEEQKRIKAELSQDVGTSKERIHELQSELDNVREQL 494


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.310    0.130    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 687,353
Number of Sequences: 2352
Number of extensions: 12619
Number of successful extensions: 30
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 83992206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)