Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0233
         (797 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF489106-1|AAM03127.1| 1192|Drosophila melanogaster unknown prot...    30   3.2  
AE014134-2811|AAF53590.3| 1876|Drosophila melanogaster CG4841-PA...    30   3.2  
BT001718-1|AAN71473.1|  755|Drosophila melanogaster RE68667p pro...    30   4.2  
AF262045-1|AAG36930.1| 1227|Drosophila melanogaster sunday drive...    30   4.2  
AE014296-1345|AAN12032.2| 1194|Drosophila melanogaster CG8110-PB...    30   4.2  
AE014296-1344|AAF50505.2| 1227|Drosophila melanogaster CG8110-PA...    30   4.2  
BT016010-1|AAV36895.1|  820|Drosophila melanogaster RE24340p pro...    29   5.6  
AE013599-1792|AAF58320.2| 8805|Drosophila melanogaster CG18076-P...    29   7.4  

>AF489106-1|AAM03127.1| 1192|Drosophila melanogaster unknown
           protein.
          Length = 1192

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +1

Query: 493 KELQHK-ISDPERNKDKLIGPVKKTLYTIKNNKIVRLEPMDSSENSEDEYRAV 648
           KE Q   +SD ER KD L   V+   + I   + V +EP+ SS+ S D+ RAV
Sbjct: 592 KETQFSPLSDSER-KDSLSINVEFVKFHITRCRKVYIEPLPSSKRSLDQSRAV 643


>AE014134-2811|AAF53590.3| 1876|Drosophila melanogaster CG4841-PA
            protein.
          Length = 1876

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +1

Query: 493  KELQHK-ISDPERNKDKLIGPVKKTLYTIKNNKIVRLEPMDSSENSEDEYRAV 648
            KE Q   +SD ER KD L   V+   + I   + V +EP+ SS+ S D+ RAV
Sbjct: 978  KETQFSPLSDSER-KDSLSINVEFVKFHITRCRKVYIEPLPSSKRSLDQSRAV 1029


>BT001718-1|AAN71473.1|  755|Drosophila melanogaster RE68667p
           protein.
          Length = 755

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 21/73 (28%), Positives = 38/73 (52%)
 Frame = +1

Query: 43  LLKKAGLTTDEIKLYQENECGKLNQQNKVETGVLKQKLHYIYTRIQNLKEQVKQQNNQPS 222
           L+ K    T E+++ +E    +LN   +  T  L+Q++  +   ++  KEQVKQQN +  
Sbjct: 351 LIVKVDELTGEVEIVRE----ELNAMQQSRTK-LRQRISELEDELKKAKEQVKQQNTE-- 403

Query: 223 TSKTDVSIKNLER 261
             + DV +   +R
Sbjct: 404 QEENDVPLAQRKR 416


>AF262045-1|AAG36930.1| 1227|Drosophila melanogaster sunday driver
           protein.
          Length = 1227

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 21/73 (28%), Positives = 38/73 (52%)
 Frame = +1

Query: 43  LLKKAGLTTDEIKLYQENECGKLNQQNKVETGVLKQKLHYIYTRIQNLKEQVKQQNNQPS 222
           L+ K    T E+++ +E    +LN   +  T  L+Q++  +   ++  KEQVKQQN +  
Sbjct: 390 LIVKVDELTGEVEIVRE----ELNAMQQSRTK-LRQRISELEDELKKAKEQVKQQNTE-- 442

Query: 223 TSKTDVSIKNLER 261
             + DV +   +R
Sbjct: 443 QEENDVPLAQRKR 455


>AE014296-1345|AAN12032.2| 1194|Drosophila melanogaster CG8110-PB,
           isoform B protein.
          Length = 1194

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 21/73 (28%), Positives = 38/73 (52%)
 Frame = +1

Query: 43  LLKKAGLTTDEIKLYQENECGKLNQQNKVETGVLKQKLHYIYTRIQNLKEQVKQQNNQPS 222
           L+ K    T E+++ +E    +LN   +  T  L+Q++  +   ++  KEQVKQQN +  
Sbjct: 357 LIVKVDELTGEVEIVRE----ELNAMQQSRTK-LRQRISELEDELKKAKEQVKQQNTE-- 409

Query: 223 TSKTDVSIKNLER 261
             + DV +   +R
Sbjct: 410 QEENDVPLAQRKR 422


>AE014296-1344|AAF50505.2| 1227|Drosophila melanogaster CG8110-PA,
           isoform A protein.
          Length = 1227

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 21/73 (28%), Positives = 38/73 (52%)
 Frame = +1

Query: 43  LLKKAGLTTDEIKLYQENECGKLNQQNKVETGVLKQKLHYIYTRIQNLKEQVKQQNNQPS 222
           L+ K    T E+++ +E    +LN   +  T  L+Q++  +   ++  KEQVKQQN +  
Sbjct: 390 LIVKVDELTGEVEIVRE----ELNAMQQSRTK-LRQRISELEDELKKAKEQVKQQNTE-- 442

Query: 223 TSKTDVSIKNLER 261
             + DV +   +R
Sbjct: 443 QEENDVPLAQRKR 455


>BT016010-1|AAV36895.1|  820|Drosophila melanogaster RE24340p
           protein.
          Length = 820

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 19/67 (28%), Positives = 37/67 (55%)
 Frame = +1

Query: 61  LTTDEIKLYQENECGKLNQQNKVETGVLKQKLHYIYTRIQNLKEQVKQQNNQPSTSKTDV 240
           ++T E+++ +E    +LN   +  T  L+Q++  +   ++  KEQVKQQN +    + DV
Sbjct: 1   MSTGEVEIVRE----ELNAMQQSRTK-LRQRISELEDELKKAKEQVKQQNTE--QEENDV 53

Query: 241 SIKNLER 261
            +   +R
Sbjct: 54  PLAQRKR 60


>AE013599-1792|AAF58320.2| 8805|Drosophila melanogaster CG18076-PH,
            isoform H protein.
          Length = 8805

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 16/69 (23%), Positives = 35/69 (50%)
 Frame = +1

Query: 421  QNNTVILDNSNRKPVNRPGSLWDVKELQHKISDPERNKDKLIGPVKKTLYTIKNNKIVRL 600
            +N   + +    +PV  P S  + KE++   +D ++  ++++   KKT    K  + +  
Sbjct: 3327 ENTATVKETPLNEPV--PSSPAETKEIEQTTNDDQKKPEEIVDTEKKTTEQ-KPVETIPT 3383

Query: 601  EPMDSSENS 627
            EP+ +SE +
Sbjct: 3384 EPISTSETT 3392


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.310    0.130    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,117,334
Number of Sequences: 53049
Number of extensions: 504633
Number of successful extensions: 1147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3716337612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)