Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0233
(797 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46937-7|CAH10806.1| 109|Caenorhabditis elegans Hypothetical pr... 33 0.24
Z83241-5|CAH10791.1| 1183|Caenorhabditis elegans Hypothetical pr... 32 0.41
Z83241-4|CAB05819.3| 1181|Caenorhabditis elegans Hypothetical pr... 32 0.41
Z81120-11|CAH10815.1| 1183|Caenorhabditis elegans Hypothetical p... 32 0.41
Z81120-10|CAB03350.3| 1181|Caenorhabditis elegans Hypothetical p... 32 0.41
AL033508-3|CAA22054.1| 315|Caenorhabditis elegans Hypothetical ... 30 2.2
U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical pr... 29 5.1
AL034488-2|CAA22448.1| 210|Caenorhabditis elegans Hypothetical ... 29 5.1
Z83114-5|CAB05550.2| 485|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical pr... 28 6.7
X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy ch... 28 6.7
AF348167-1|AAK37545.1| 485|Caenorhabditis elegans Pelle IRAK-li... 28 6.7
Z77134-2|CAB00873.1| 877|Caenorhabditis elegans Hypothetical pr... 28 8.9
>Z46937-7|CAH10806.1| 109|Caenorhabditis elegans Hypothetical
protein F43C1.7 protein.
Length = 109
Score = 33.1 bits (72), Expect = 0.24
Identities = 20/63 (31%), Positives = 33/63 (52%)
Frame = +1
Query: 34 HLXLLKKAGLTTDEIKLYQENECGKLNQQNKVETGVLKQKLHYIYTRIQNLKEQVKQQNN 213
H+ L +G+T D I EC +L ++N ++ GV +K+ YT +NLK+ Q
Sbjct: 48 HVYLQLPSGITIDTIPEELLEECCQLVKKNSIQ-GVKMEKVEVNYTLKENLKKVKGMQTG 106
Query: 214 QPS 222
+ S
Sbjct: 107 EVS 109
>Z83241-5|CAH10791.1| 1183|Caenorhabditis elegans Hypothetical
protein T12D8.9b protein.
Length = 1183
Score = 32.3 bits (70), Expect = 0.41
Identities = 19/72 (26%), Positives = 39/72 (54%)
Frame = +1
Query: 493 KELQHKISDPERNKDKLIGPVKKTLYTIKNNKIVRLEPMDSSENSEDEYRAVNIVVPINN 672
K+ ++ +PE ++ PVKK+ ++K K+ +P S++ E+E +V+ P +
Sbjct: 697 KKNSKRVKEPEPEPEEEPEPVKKSKRSLKKVKVAVPDPAPESKDEENE-ESVSEQEPESE 755
Query: 673 AEAQLLEGTKMS 708
+E + + TK S
Sbjct: 756 SEPEPAKKTKRS 767
>Z83241-4|CAB05819.3| 1181|Caenorhabditis elegans Hypothetical
protein T12D8.9a protein.
Length = 1181
Score = 32.3 bits (70), Expect = 0.41
Identities = 19/72 (26%), Positives = 39/72 (54%)
Frame = +1
Query: 493 KELQHKISDPERNKDKLIGPVKKTLYTIKNNKIVRLEPMDSSENSEDEYRAVNIVVPINN 672
K+ ++ +PE ++ PVKK+ ++K K+ +P S++ E+E +V+ P +
Sbjct: 695 KKNSKRVKEPEPEPEEEPEPVKKSKRSLKKVKVAVPDPAPESKDEENE-ESVSEQEPESE 753
Query: 673 AEAQLLEGTKMS 708
+E + + TK S
Sbjct: 754 SEPEPAKKTKRS 765
>Z81120-11|CAH10815.1| 1183|Caenorhabditis elegans Hypothetical
protein T12D8.9b protein.
Length = 1183
Score = 32.3 bits (70), Expect = 0.41
Identities = 19/72 (26%), Positives = 39/72 (54%)
Frame = +1
Query: 493 KELQHKISDPERNKDKLIGPVKKTLYTIKNNKIVRLEPMDSSENSEDEYRAVNIVVPINN 672
K+ ++ +PE ++ PVKK+ ++K K+ +P S++ E+E +V+ P +
Sbjct: 697 KKNSKRVKEPEPEPEEEPEPVKKSKRSLKKVKVAVPDPAPESKDEENE-ESVSEQEPESE 755
Query: 673 AEAQLLEGTKMS 708
+E + + TK S
Sbjct: 756 SEPEPAKKTKRS 767
>Z81120-10|CAB03350.3| 1181|Caenorhabditis elegans Hypothetical
protein T12D8.9a protein.
Length = 1181
Score = 32.3 bits (70), Expect = 0.41
Identities = 19/72 (26%), Positives = 39/72 (54%)
Frame = +1
Query: 493 KELQHKISDPERNKDKLIGPVKKTLYTIKNNKIVRLEPMDSSENSEDEYRAVNIVVPINN 672
K+ ++ +PE ++ PVKK+ ++K K+ +P S++ E+E +V+ P +
Sbjct: 695 KKNSKRVKEPEPEPEEEPEPVKKSKRSLKKVKVAVPDPAPESKDEENE-ESVSEQEPESE 753
Query: 673 AEAQLLEGTKMS 708
+E + + TK S
Sbjct: 754 SEPEPAKKTKRS 765
>AL033508-3|CAA22054.1| 315|Caenorhabditis elegans Hypothetical
protein Y106G6G.4 protein.
Length = 315
Score = 29.9 bits (64), Expect = 2.2
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Frame = +1
Query: 424 NNTVILDNSNRKPVNRPGSLWDVKELQHKISDPERNKDKLIGPVK-KTLYTIKNNKIVRL 600
N+T I+ ++ R P+NR S DVKE L G K + T I
Sbjct: 171 NSTQII-STLRPPLNRSTSSTDVKE----NGTTHVTSANLTGTTKIPVIVTTIGFTITST 225
Query: 601 EPMDSSENSEDEYRAVNIVVPINNAEAQLLEGT 699
+P ++ +S +V V+PIN++ +L T
Sbjct: 226 DPPPTTNSSNSTVESVTSVIPINSSTVPVLNTT 258
>U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical
protein C32E12.4 protein.
Length = 1553
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 496 ELQHKISDPERNKDKLIGPVKKTLYTIKNNKIVRLEPMDSSENSEDE 636
E+ I PE+ + L+ P+KK + +IK N I E D + ED+
Sbjct: 410 EIIKPIEQPEKASEVLVEPIKKVVSSIKINGI---EVKDVEKTKEDK 453
>AL034488-2|CAA22448.1| 210|Caenorhabditis elegans Hypothetical
protein Y54G11A.2 protein.
Length = 210
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +1
Query: 34 HLXLLKKAGLTTDEIKLYQENECGKLNQQNKVETGVLKQKLHYIYTRIQNLKE 192
H+ L +G+T D I +C +L +QN +E G + +YT NLK+
Sbjct: 48 HVYLRLHSGMTIDSIPEALLIDCCQLVKQNSIE-GCKLNNVAIVYTMWSNLKK 99
>Z83114-5|CAB05550.2| 485|Caenorhabditis elegans Hypothetical
protein K09B11.1 protein.
Length = 485
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +1
Query: 82 LYQENECGKLNQQNKVETGVLKQKLHYIYTRIQNLKEQVKQQNNQPSTSKTDVSIKNLE 258
LYQ KL + ++ + +K HY+ ++ N +V +Q QP S++ +K E
Sbjct: 80 LYQLFAKTKLIRLMRMMRSQVHEKYHYLENKVTNSTSRVSKQMVQPPGSQSASRLKKTE 138
>Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +1
Query: 490 VKELQHKISDPERNKDKLIGPVKKTLYTIKNNKIVRLEPMDSSENSE-DEYRAVNI 654
V+E + ++++ ++N DKL V+K +K K +LE + NS +YR V +
Sbjct: 1863 VREFEFQVAEDKKNYDKLQELVEKLTAKLKLQK-KQLEEAEEQANSHLSKYRTVQL 1917
>Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +1
Query: 490 VKELQHKISDPERNKDKLIGPVKKTLYTIKNNKIVRLEPMDSSENSE-DEYRAVNI 654
V+E + ++++ ++N DKL V+K +K K +LE + NS +YR V +
Sbjct: 1863 VREFEFQVAEDKKNYDKLQELVEKLTAKLKLQK-KQLEEAEEQANSHLSKYRTVQL 1917
>X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy chain 2
protein.
Length = 1947
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +1
Query: 490 VKELQHKISDPERNKDKLIGPVKKTLYTIKNNKIVRLEPMDSSENSE-DEYRAVNI 654
V+E + ++++ ++N DKL V+K +K K +LE + NS +YR V +
Sbjct: 1863 VREFEFQVAEDKKNYDKLQELVEKLTAKLKLQK-KQLEEAEEQANSHLSKYRTVQL 1917
>AF348167-1|AAK37545.1| 485|Caenorhabditis elegans Pelle IRAK-like
kinase 1 protein.
Length = 485
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +1
Query: 82 LYQENECGKLNQQNKVETGVLKQKLHYIYTRIQNLKEQVKQQNNQPSTSKTDVSIKNLE 258
LYQ KL + ++ + +K HY+ ++ N +V +Q QP S++ +K E
Sbjct: 80 LYQLFAKTKLIRLMRMMRSQVHEKYHYLENKVTNSTSRVSKQMVQPPGSQSASRLKKTE 138
>Z77134-2|CAB00873.1| 877|Caenorhabditis elegans Hypothetical
protein R09H10.4 protein.
Length = 877
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +1
Query: 163 IYTRIQNLKEQVKQQNNQPSTSKTDVSIKNLERNIPKNTYCD 288
+YT I ++ E ++ + N + +S KN + + ++YCD
Sbjct: 416 MYTAILSICENLEMRKNATKRKDSGLSFKNEQFTVMLDSYCD 457
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.310 0.130 0.366
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,305,618
Number of Sequences: 27780
Number of extensions: 290326
Number of successful extensions: 762
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
- SilkBase 1999-2023 -