Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0233
(797 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g36630.1 68415.m04492 expressed protein contains Pfam profil... 31 1.2
At5g20580.2 68418.m02444 expressed protein predicted protein, Ar... 30 2.0
At5g20580.1 68418.m02443 expressed protein predicted protein, Ar... 30 2.0
At5g47820.2 68418.m05908 kinesin-like protein (FRA1) identical t... 29 4.7
At5g47820.1 68418.m05907 kinesin-like protein (FRA1) identical t... 29 4.7
At1g76780.1 68414.m08935 expressed protein ; expression supporte... 29 4.7
At1g21730.1 68414.m02720 kinesin-related protein (MKRP1) Similar... 29 4.7
At5g27060.1 68418.m03229 disease resistance family protein conta... 28 6.2
At1g67270.1 68414.m07656 hypothetical protein 28 6.2
At1g58190.1 68414.m06605 leucine-rich repeat family protein cont... 28 6.2
At5g62900.1 68418.m07893 expressed protein 28 8.3
At3g57780.1 68416.m06436 expressed protein 28 8.3
>At2g36630.1 68415.m04492 expressed protein contains Pfam profile:
PF01925 domain of unknown function DUF81
Length = 459
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 552 WSNEFIFISFWITYLMLQFF-NIPKAAWTIYW 460
W I ++ W+T+L++Q N K TIYW
Sbjct: 237 WKGLLILVTVWLTFLLIQIVKNEIKVCSTIYW 268
>At5g20580.2 68418.m02444 expressed protein predicted protein,
Arabidopsis thaliana
Length = 348
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 94 NECGKLNQQNKVETGVLKQKLHYIYTRIQNLKEQV-KQQNNQPSTSKTDVS 243
+E G+L+ Q ++ LHY+ I L+E + K + N ST + D++
Sbjct: 201 HEAGRLSDQQMALLQYQRENLHYLSEEILRLQESLSKYETNGSSTPQVDLA 251
>At5g20580.1 68418.m02443 expressed protein predicted protein,
Arabidopsis thaliana
Length = 348
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 94 NECGKLNQQNKVETGVLKQKLHYIYTRIQNLKEQV-KQQNNQPSTSKTDVS 243
+E G+L+ Q ++ LHY+ I L+E + K + N ST + D++
Sbjct: 201 HEAGRLSDQQMALLQYQRENLHYLSEEILRLQESLSKYETNGSSTPQVDLA 251
>At5g47820.2 68418.m05908 kinesin-like protein (FRA1) identical to
kinesin-like protein [Arabidopsis thaliana] GI:27260890;
contains Pfam profile PF00225: Kinesin motor domain
Length = 1035
Score = 28.7 bits (61), Expect = 4.7
Identities = 9/26 (34%), Positives = 21/26 (80%)
Frame = +1
Query: 130 ETGVLKQKLHYIYTRIQNLKEQVKQQ 207
+TG++ Q ++ ++T+I+ LK+Q++ Q
Sbjct: 109 QTGIIPQVMNALFTKIETLKQQIEFQ 134
>At5g47820.1 68418.m05907 kinesin-like protein (FRA1) identical to
kinesin-like protein [Arabidopsis thaliana] GI:27260890;
contains Pfam profile PF00225: Kinesin motor domain
Length = 1035
Score = 28.7 bits (61), Expect = 4.7
Identities = 9/26 (34%), Positives = 21/26 (80%)
Frame = +1
Query: 130 ETGVLKQKLHYIYTRIQNLKEQVKQQ 207
+TG++ Q ++ ++T+I+ LK+Q++ Q
Sbjct: 109 QTGIIPQVMNALFTKIETLKQQIEFQ 134
>At1g76780.1 68414.m08935 expressed protein ; expression supported by
MPSS
Length = 1871
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 175 IQNLKEQVKQQNNQPSTSKTDVSIKNLERNIPKNT-YCDGHPMNDIKTLENC 327
I+ E+ K+QN P TS +V+ ++ ER + K T + H ENC
Sbjct: 1254 IEEESEKHKEQNKIPETSNPEVNEEDEERVVEKETKEVEAHVQELEGKTENC 1305
>At1g21730.1 68414.m02720 kinesin-related protein (MKRP1) Similar to
gb|U06698 neuronal kinesin heavy chain from Homo sapiens
and contains a PF|00225 Kinesin motor domain. EST
gb|AA042507 comes from this gene; identical to cDNA MKRP1
mRNA for kinesin-related protein, GI:16902291,
kinesin-related protein [Arabidopsis thaliana]
GI:16902292
Length = 890
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 46 LKKAGLTTDEIKLYQE-NECGKLNQQNKVETGVLKQKLHYIYTRIQNLKEQVKQQNNQ 216
L+ L ++++L +E +E GKLN++ E K+ +QNL E+V + N+
Sbjct: 827 LEIENLKKEKMRLIEEKDELGKLNKKLTEEASYAKELASAAAVELQNLAEEVTRLCNE 884
>At5g27060.1 68418.m03229 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
esculentum] gi|3894387|gb|AAC78593
Length = 957
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 353 MSSLRCAKRQFSKVFISFIGCPSQYVFLGMFLSKF 249
+++L + FS SFIG SQ FLG+F + F
Sbjct: 243 LTTLDLSNNNFSGQIPSFIGNLSQLTFLGLFSNNF 277
>At1g67270.1 68414.m07656 hypothetical protein
Length = 506
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Frame = +1
Query: 4 EFSRAEEEVRHLXLLKKAGLTTDEIKLY---QENECGKLNQQNKVETGVLKQKLHYIYTR 174
E A +++ L L L+T ++ Y Q ECG+ ++ K + KQK + +
Sbjct: 324 EKMNASRKLKLLNFLCDESLSTWAMRNYINSQTEECGERKKEAKQKAAAAKQKEKQLKQK 383
Query: 175 IQ-NLKEQVKQQNNQPSTSKTDVSIKNLERNIPKNTY 282
+Q + + + ++N P + + SI + R+ K +
Sbjct: 384 MQGEVAKSIMEKNGAPLSIEEHNSIVSQIRDEAKEAH 420
>At1g58190.1 68414.m06605 leucine-rich repeat family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.2
[Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
Length = 1784
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 561 LFYWSNEFIFISFWITYLMLQFFNIPKAAWTIYWF 457
+FYWS + WIT+++ F+ P W WF
Sbjct: 1740 IFYWSLAATYGVTWITFIVFLCFDSP---WRRVWF 1771
>At5g62900.1 68418.m07893 expressed protein
Length = 161
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 1 GEFSRAEEEVRHLXLLKKAGLTTDEIKLYQENECGKLN 114
GEFS AEEE+ L L ++ D + E + G +N
Sbjct: 101 GEFSVAEEEINPLTLRSESASDKDTQRRIHEKQRGMMN 138
>At3g57780.1 68416.m06436 expressed protein
Length = 670
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/41 (29%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Frame = +1
Query: 91 ENECGKLNQQNK---VETGVLKQKLHYIYTRIQNLKEQVKQ 204
ENE G + ++N+ + +LKQ + + TR++ L+E++++
Sbjct: 144 ENEAGDVKEKNENFEEDEEMLKQMVETLETRVEKLEEELRE 184
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.310 0.130 0.366
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,816,166
Number of Sequences: 28952
Number of extensions: 244811
Number of successful extensions: 482
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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