Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0232
         (812 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    23   2.9  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.9  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    23   3.8  
AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochr...    23   3.8  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   6.7  

>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 237 KKASGPDASDVIIAQGAFSYTAPDGTVISLNY 332
           K+  GP      + Q +  Y   DG+VI  NY
Sbjct: 330 KEVPGPCCVPTQLGQMSMLYLGSDGSVILKNY 361


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 588  FYNANCNISLWI 623
            FYNAN +I+ WI
Sbjct: 1616 FYNANFSINYWI 1627


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = -1

Query: 725 FSRRIYMFSYVFFVIA*LYKYVCFVISYRFEHVINPKR 612
           F+  +Y F+++FF  A    ++  ++     HV   +R
Sbjct: 64  FNSYMYAFTHIFFFFAICCDFIALIV-VNIVHVFRKRR 100


>AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 124

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 57  TMKSIFLFGLVXXXXXXPQPQKSD 128
           T  S+F++G+       P+P+K D
Sbjct: 83  TFLSLFIYGMHHNEKYFPEPEKFD 106


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -3

Query: 639 F*ACHKSKEKYYNLHYKNESLIIVLNSC 556
           F  C +S  K+Y    +N +     NSC
Sbjct: 362 FIICSESNRKFYFKRARNGTFSTTANSC 389


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,099
Number of Sequences: 336
Number of extensions: 3484
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22206566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)