Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0232
         (812 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0125 - 25828093-25828911,25830398-25830530,25830644-25831062     36   0.051
06_03_0488 - 21361131-21361226,21361922-21362124,21362252-213624...    29   4.4  
01_01_1048 + 8272486-8272941                                           29   5.8  
06_01_0804 + 6038640-6040262                                           28   7.7  
02_05_0437 - 28986459-28986524,28986606-28986731,28986842-289869...    28   7.7  

>05_06_0125 - 25828093-25828911,25830398-25830530,25830644-25831062
          Length = 456

 Score = 35.5 bits (78), Expect = 0.051
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = -1

Query: 467 GSVP*GWWRRRGCKEV*GLLDCWRYRRRRW 378
           G  P GWWRRRGC+   G    WR R+R W
Sbjct: 86  GGGPDGWWRRRGCR---GGGFGWRRRQRTW 112


>06_03_0488 -
           21361131-21361226,21361922-21362124,21362252-21362410,
           21362694-21362813,21365602-21365801,21366243-21366286
          Length = 273

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -3

Query: 474 GSRISSVRMVEEARLQGSLRP 412
           GSR+ S RM+E+A  +GS+ P
Sbjct: 8   GSRLKSTRMIEDAEKRGSISP 28


>01_01_1048 + 8272486-8272941
          Length = 151

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -1

Query: 320 DDGAIWCCIAESPLSN-DHVTR 258
           DDG  WCC  E P+S   HV R
Sbjct: 41  DDGGDWCCYEELPVSTPPHVPR 62


>06_01_0804 + 6038640-6040262
          Length = 540

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 478 EWFEDQFREDGGGGAVARKSKA 413
           EWF++++   GGGG   R S+A
Sbjct: 23  EWFKERYGGGGGGGDAPRSSRA 44


>02_05_0437 -
           28986459-28986524,28986606-28986731,28986842-28986941,
           28987583-28987660,28987857-28987937,28989488-28989624,
           28989693-28989743,28989785-28989878,28990091-28990260
          Length = 300

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 171 DGSYQFSYETDNGIKAEETGSL 236
           DGSY F++ T  GI+A ++G +
Sbjct: 171 DGSYYFAFYTTGGIEARDSGKI 192


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,413,565
Number of Sequences: 37544
Number of extensions: 367144
Number of successful extensions: 864
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)