Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0232
         (812 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   1.1  
SB_6171| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.1  
SB_12271| Best HMM Match : DUF1079 (HMM E-Value=1.2)                   28   7.8  

>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2982

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 108  PQPQKSDQTAEIIKQDFDQQVDGSYQFSYETDNGIKAEETGS 233
            P P  +D    +I +++   VD S    Y  DN + A ETGS
Sbjct: 2737 PDPLTADPATVVIAEEWQMIVDASVDIDYPDDNSVGA-ETGS 2777


>SB_6171| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 830

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = +3

Query: 129 QTAEIIKQDFDQQVDGSYQFSY---ETDNGIKAEETGSLKKASGPDASDVIIAQGAF 290
           Q A +IK+DF+   D  +Q SY    T + I  ++  ++ K++  ++   ++ QG+F
Sbjct: 196 QAAGVIKEDFESYRDQGFQVSYFQTFTPSSISNKQLKNILKSAAKESFVSVLLQGSF 252


>SB_12271| Best HMM Match : DUF1079 (HMM E-Value=1.2)
          Length = 1716

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 210  IKAEETGSLKKASGPDASDVIIAQGAFSYTAPDGTVISLNYVAD 341
            +  E T  ++   G D    +  Q   +YTA DGTV+ L    D
Sbjct: 971  VPQESTSPIEVPRGTDTPAQVHHQPGLTYTAHDGTVVQLRQKDD 1014


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,243,964
Number of Sequences: 59808
Number of extensions: 412422
Number of successful extensions: 729
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)