BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0232 (812 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value L11369-1|AAA36418.1| 258|Homo sapiens protocadherin 42 protein. 38 0.057 AB006757-1|BAA25196.1| 1200|Homo sapiens PCDH7 (BH-Pcdh)c protein. 37 0.100 AC110766-1|AAY40944.1| 64|Homo sapiens unknown protein. 36 0.13 BC028165-1|AAH28165.1| 1159|Homo sapiens protocadherin 17 protein. 34 0.70 AL445288-1|CAI17092.1| 1159|Homo sapiens protocadherin 17 protein. 34 0.70 AL445216-1|CAH71250.1| 1159|Homo sapiens protocadherin 17 protein. 34 0.70 AF029343-1|AAB84144.1| 889|Homo sapiens protocadherin 68 protein. 34 0.70 >L11369-1|AAA36418.1| 258|Homo sapiens protocadherin 42 protein. Length = 258 Score = 37.5 bits (83), Expect = 0.057 Identities = 18/61 (29%), Positives = 33/61 (54%) Frame = +3 Query: 162 QQVDGSYQFSYETDNGIKAEETGSLKKASGPDASDVIIAQGAFSYTAPDGTVISLNYVAD 341 Q++ Q SY D+G++ ET S K +SGP + + + + T PDG++ + + + Sbjct: 69 QELQDPSQHSYY-DSGLEESETPSSKSSSGPRLGPLALPEDHYERTTPDGSIGEMEHPEN 127 Query: 342 D 344 D Sbjct: 128 D 128 >AB006757-1|BAA25196.1| 1200|Homo sapiens PCDH7 (BH-Pcdh)c protein. Length = 1200 Score = 36.7 bits (81), Expect = 0.100 Identities = 22/64 (34%), Positives = 33/64 (51%) Frame = +3 Query: 132 TAEIIKQDFDQQVDGSYQFSYETDNGIKAEETGSLKKASGPDASDVIIAQGAFSYTAPDG 311 T ++ Q D GS Q Y D+G++ ET S K +SGP + + + + T PDG Sbjct: 1017 TFSVVSQPQDPH-QGSLQSCY--DSGLEESETPSSKSSSGPRLGALPLPEDNYERTTPDG 1073 Query: 312 TVIS 323 +V S Sbjct: 1074 SVDS 1077 >AC110766-1|AAY40944.1| 64|Homo sapiens unknown protein. Length = 64 Score = 36.3 bits (80), Expect = 0.13 Identities = 21/62 (33%), Positives = 32/62 (51%) Frame = +3 Query: 132 TAEIIKQDFDQQVDGSYQFSYETDNGIKAEETGSLKKASGPDASDVIIAQGAFSYTAPDG 311 T ++ Q D GS Q Y D+G++ ET S K +SGP + + + + T PDG Sbjct: 6 TFSVVSQPQDPH-QGSLQSCY--DSGLEESETPSSKSSSGPRLGALPLPEDNYERTTPDG 62 Query: 312 TV 317 +V Sbjct: 63 SV 64 >BC028165-1|AAH28165.1| 1159|Homo sapiens protocadherin 17 protein. Length = 1159 Score = 33.9 bits (74), Expect = 0.70 Identities = 17/36 (47%), Positives = 20/36 (55%) Frame = +3 Query: 246 SGPDASDVIIAQGAFSYTAPDGTVISLNYVADDDGG 353 + P V + QGA S AP GTVI+L V D D G Sbjct: 347 NAPSIGFVSVRQGALSEAAPPGTVIALVRVTDRDSG 382 >AL445288-1|CAI17092.1| 1159|Homo sapiens protocadherin 17 protein. Length = 1159 Score = 33.9 bits (74), Expect = 0.70 Identities = 17/36 (47%), Positives = 20/36 (55%) Frame = +3 Query: 246 SGPDASDVIIAQGAFSYTAPDGTVISLNYVADDDGG 353 + P V + QGA S AP GTVI+L V D D G Sbjct: 347 NAPSIGFVSVRQGALSEAAPPGTVIALVRVTDRDSG 382 >AL445216-1|CAH71250.1| 1159|Homo sapiens protocadherin 17 protein. Length = 1159 Score = 33.9 bits (74), Expect = 0.70 Identities = 17/36 (47%), Positives = 20/36 (55%) Frame = +3 Query: 246 SGPDASDVIIAQGAFSYTAPDGTVISLNYVADDDGG 353 + P V + QGA S AP GTVI+L V D D G Sbjct: 347 NAPSIGFVSVRQGALSEAAPPGTVIALVRVTDRDSG 382 >AF029343-1|AAB84144.1| 889|Homo sapiens protocadherin 68 protein. Length = 889 Score = 33.9 bits (74), Expect = 0.70 Identities = 17/36 (47%), Positives = 20/36 (55%) Frame = +3 Query: 246 SGPDASDVIIAQGAFSYTAPDGTVISLNYVADDDGG 353 + P V + QGA S AP GTVI+L V D D G Sbjct: 347 NAPSIGFVSVRQGALSEAAPPGTVIALVRVTDRDSG 382 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 103,276,807 Number of Sequences: 237096 Number of extensions: 2018566 Number of successful extensions: 3496 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 3404 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3496 length of database: 76,859,062 effective HSP length: 89 effective length of database: 55,757,518 effective search space used: 10092110758 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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