Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0232
         (812 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L11369-1|AAA36418.1|  258|Homo sapiens protocadherin 42 protein.       38   0.057
AB006757-1|BAA25196.1| 1200|Homo sapiens PCDH7 (BH-Pcdh)c protein.     37   0.100
AC110766-1|AAY40944.1|   64|Homo sapiens unknown protein.              36   0.13 
BC028165-1|AAH28165.1| 1159|Homo sapiens protocadherin 17 protein.     34   0.70 
AL445288-1|CAI17092.1| 1159|Homo sapiens protocadherin 17 protein.     34   0.70 
AL445216-1|CAH71250.1| 1159|Homo sapiens protocadherin 17 protein.     34   0.70 
AF029343-1|AAB84144.1|  889|Homo sapiens protocadherin 68 protein.     34   0.70 

>L11369-1|AAA36418.1|  258|Homo sapiens protocadherin 42 protein.
          Length = 258

 Score = 37.5 bits (83), Expect = 0.057
 Identities = 18/61 (29%), Positives = 33/61 (54%)
 Frame = +3

Query: 162 QQVDGSYQFSYETDNGIKAEETGSLKKASGPDASDVIIAQGAFSYTAPDGTVISLNYVAD 341
           Q++    Q SY  D+G++  ET S K +SGP    + + +  +  T PDG++  + +  +
Sbjct: 69  QELQDPSQHSYY-DSGLEESETPSSKSSSGPRLGPLALPEDHYERTTPDGSIGEMEHPEN 127

Query: 342 D 344
           D
Sbjct: 128 D 128


>AB006757-1|BAA25196.1| 1200|Homo sapiens PCDH7 (BH-Pcdh)c protein.
          Length = 1200

 Score = 36.7 bits (81), Expect = 0.100
 Identities = 22/64 (34%), Positives = 33/64 (51%)
 Frame = +3

Query: 132  TAEIIKQDFDQQVDGSYQFSYETDNGIKAEETGSLKKASGPDASDVIIAQGAFSYTAPDG 311
            T  ++ Q  D    GS Q  Y  D+G++  ET S K +SGP    + + +  +  T PDG
Sbjct: 1017 TFSVVSQPQDPH-QGSLQSCY--DSGLEESETPSSKSSSGPRLGALPLPEDNYERTTPDG 1073

Query: 312  TVIS 323
            +V S
Sbjct: 1074 SVDS 1077


>AC110766-1|AAY40944.1|   64|Homo sapiens unknown protein.
          Length = 64

 Score = 36.3 bits (80), Expect = 0.13
 Identities = 21/62 (33%), Positives = 32/62 (51%)
 Frame = +3

Query: 132 TAEIIKQDFDQQVDGSYQFSYETDNGIKAEETGSLKKASGPDASDVIIAQGAFSYTAPDG 311
           T  ++ Q  D    GS Q  Y  D+G++  ET S K +SGP    + + +  +  T PDG
Sbjct: 6   TFSVVSQPQDPH-QGSLQSCY--DSGLEESETPSSKSSSGPRLGALPLPEDNYERTTPDG 62

Query: 312 TV 317
           +V
Sbjct: 63  SV 64


>BC028165-1|AAH28165.1| 1159|Homo sapiens protocadherin 17 protein.
          Length = 1159

 Score = 33.9 bits (74), Expect = 0.70
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = +3

Query: 246 SGPDASDVIIAQGAFSYTAPDGTVISLNYVADDDGG 353
           + P    V + QGA S  AP GTVI+L  V D D G
Sbjct: 347 NAPSIGFVSVRQGALSEAAPPGTVIALVRVTDRDSG 382


>AL445288-1|CAI17092.1| 1159|Homo sapiens protocadherin 17 protein.
          Length = 1159

 Score = 33.9 bits (74), Expect = 0.70
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = +3

Query: 246 SGPDASDVIIAQGAFSYTAPDGTVISLNYVADDDGG 353
           + P    V + QGA S  AP GTVI+L  V D D G
Sbjct: 347 NAPSIGFVSVRQGALSEAAPPGTVIALVRVTDRDSG 382


>AL445216-1|CAH71250.1| 1159|Homo sapiens protocadherin 17 protein.
          Length = 1159

 Score = 33.9 bits (74), Expect = 0.70
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = +3

Query: 246 SGPDASDVIIAQGAFSYTAPDGTVISLNYVADDDGG 353
           + P    V + QGA S  AP GTVI+L  V D D G
Sbjct: 347 NAPSIGFVSVRQGALSEAAPPGTVIALVRVTDRDSG 382


>AF029343-1|AAB84144.1|  889|Homo sapiens protocadherin 68 protein.
          Length = 889

 Score = 33.9 bits (74), Expect = 0.70
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = +3

Query: 246 SGPDASDVIIAQGAFSYTAPDGTVISLNYVADDDGG 353
           + P    V + QGA S  AP GTVI+L  V D D G
Sbjct: 347 NAPSIGFVSVRQGALSEAAPPGTVIALVRVTDRDSG 382


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,276,807
Number of Sequences: 237096
Number of extensions: 2018566
Number of successful extensions: 3496
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3496
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10092110758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)