Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0232
         (812 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80450-10|AAB37834.1|  417|Caenorhabditis elegans Temporarily as...    29   3.0  
U80450-9|AAK77615.1| 1112|Caenorhabditis elegans Temporarily ass...    29   3.0  
AC006772-1|AAF60610.3|  326|Caenorhabditis elegans Hypothetical ...    29   4.0  
Z50755-4|CAA90634.1|  369|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U64862-6|AAB52623.3|  560|Caenorhabditis elegans Temporarily ass...    28   9.1  
AF036705-7|AAB95174.1|  324|Caenorhabditis elegans Hypothetical ...    28   9.1  
AC025727-1|AAG23391.3|  429|Caenorhabditis elegans Hypothetical ...    28   9.1  

>U80450-10|AAB37834.1|  417|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 163, isoform b protein.
          Length = 417

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 141 IIKQDFDQQVDGSYQFSYETDNGIKAEETGSLKKASGPDASDVI 272
           ++++D     D + QFS      I     G LKK++G D S++I
Sbjct: 89  VMEEDVGGGTDANEQFSRVIQRQISGAGGGILKKSNGKDTSEII 132


>U80450-9|AAK77615.1| 1112|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 163, isoform a protein.
          Length = 1112

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 141 IIKQDFDQQVDGSYQFSYETDNGIKAEETGSLKKASGPDASDVI 272
           ++++D     D + QFS      I     G LKK++G D S++I
Sbjct: 784 VMEEDVGGGTDANEQFSRVIQRQISGAGGGILKKSNGKDTSEII 827


>AC006772-1|AAF60610.3|  326|Caenorhabditis elegans Hypothetical
           protein Y46D2A.2 protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
 Frame = +3

Query: 168 VDGSYQFSYETDNGIKAEETGSL-----KKASGPDASDVIIAQG-AFSYTAPDGTVISLN 329
           +DG    S    N   +  TG L     K+A  P  S  +I Q    S T P+ TV+ LN
Sbjct: 83  IDGGLVISTSNSNADTSGLTGFLYLTTKKQADDPAFSVYVIKQAQTVSTTQPNSTVVILN 142

Query: 330 YVADDDGGF 356
              D+D  F
Sbjct: 143 TELDNDAFF 151


>Z50755-4|CAA90634.1|  369|Caenorhabditis elegans Hypothetical
           protein R12H7.4 protein.
          Length = 369

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -3

Query: 702 FIRFFCNCLII*VCMFCN*LPF*ACHKSKEKYYNLHYKNESLIIVLNSCV 553
           ++ +FC   II  C+    +    CHK+K     +H+  E  II+L  C+
Sbjct: 51  YLMYFCGGWIIVWCLIT--ILVNICHKNKGHQRYVHFYEELSIILLAVCI 98


>U64862-6|AAB52623.3|  560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 226 protein.
          Length = 560

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 401 SNPEGLRLPCNRASSTILTELILEPLAGPR 490
           +NPE L + C+R S+T+  E I   L G R
Sbjct: 301 ANPETLEIVCDRCSTTLDREYIFMALDGMR 330


>AF036705-7|AAB95174.1|  324|Caenorhabditis elegans Hypothetical
           protein F37C4.8 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 519 ACCGCGVVCKRGPASGSRISSVRMVEEARLQGSLRPSG 406
           ACC    VCK+   SG +  +V+ ++  R +  +R  G
Sbjct: 61  ACCCPKAVCKQFETSGDKCKTVKSIQHRRGELMIRRKG 98


>AC025727-1|AAG23391.3|  429|Caenorhabditis elegans Hypothetical
           protein Y73E7A.3 protein.
          Length = 429

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -3

Query: 528 LFIACCGCGVVCKRGPASGSRISSVRMVEEARLQGSLRPSG 406
           LF+ CC CG   + G ++   I  V      R+Q  L P G
Sbjct: 373 LFVCCCCCGCCFEEGDSTEGSI-DVSPSPNERMQMGLNPRG 412


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,675,338
Number of Sequences: 27780
Number of extensions: 321678
Number of successful extensions: 656
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)