Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0232
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    75   8e-16
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.48 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.5  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 74.9 bits (176), Expect = 8e-16
 Identities = 39/103 (37%), Positives = 62/103 (60%)
 Frame = +3

Query: 123 SDQTAEIIKQDFDQQVDGSYQFSYETDNGIKAEETGSLKKASGPDASDVIIAQGAFSYTA 302
           +D+ A I  Q  +   DG+Y  ++ET NGI  +E+G  K+    D    +++QG+ SYTA
Sbjct: 23  ADKDAVITSQQLEVNFDGNYINNFETSNGISHQESGQPKQV---DNETPVVSQGSDSYTA 79

Query: 303 PDGTVISLNYVADDDGGFKPEGVHLXXXXXXXXAIQKALDFLA 431
           PDG  +S+ YVAD++ GF+ +G H+         IQ+AL++ A
Sbjct: 80  PDGQQVSITYVADEN-GFQVQGSHIPTAPPIPPEIQRALEWNA 121


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.8 bits (54), Expect = 0.48
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 410 EGLRLPCNRASSTILTELILEP-LAGPRLQTTPQPQ 514
           +G+RLPC    +      ++ P L G R +T+P P+
Sbjct: 385 DGIRLPCREVEAAATARNVVAPFLIGSR-RTSPPPE 419


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 207 GIKAEETGSLKKASGPDASDVIIAQGAFSYTAPDGTVISL 326
           G+K   T +L K S P+     + Q  FSY    G +++L
Sbjct: 262 GLKYYVTPNLSKLSDPEVWIDAVTQIFFSYALGLGALVAL 301


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 207 GIKAEETGSLKKASGPDASDVIIAQGAFSYTAPDGTVISL 326
           G+K   T +L K S P+     + Q  FSY    G +++L
Sbjct: 315 GLKYYVTPNLSKLSDPEVWIDAVTQIFFSYALGLGALVAL 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,441
Number of Sequences: 438
Number of extensions: 3930
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)