Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0232
         (812 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53380.1 68416.m05891 lectin protein kinase family protein co...    28   8.5  
At1g35860.1 68414.m04455 chloroplast outer membrane protein-rela...    28   8.5  

>At3g53380.1 68416.m05891 lectin protein kinase family protein
           contains Pfam domains, PF00069: Protein kinase domain,
           PF00138: Legume lectins alpha domain, and PF00139:
           Legume lectins beta domain
          Length = 715

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 186 FSYETDNGIKAEETGSLKKASGPDASDVIIAQGAFSYTAPDGT 314
           FS+   N   +   G L     PDA+ + IA G+   T P+G+
Sbjct: 86  FSFSITNVNPSSIGGGLAFVISPDANSIGIAGGSLGLTGPNGS 128


>At1g35860.1 68414.m04455 chloroplast outer membrane protein-related
           similar to chloroplastic outer envelope membrane protein
           (OEP75) [Pisum sativum] GI:633607
          Length = 399

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
 Frame = +3

Query: 15  GHLS*TKKVHNIIMTMKSIFLFGLVXXXXXXPQPQKSDQTAEIIKQDFDQQ-VDGSYQFS 191
           GH+   K VH  +  + S+ LF  +       + ++     E+  Q+ DQ+ V+GS   S
Sbjct: 97  GHVLNIKVVHEAVRNIHSLGLFSNIEIMPIPNEKREGGVIVEVKLQETDQKSVEGSADRS 156

Query: 192 YETDNGIKAEETGSLKKASGPDASDVIIAQGAFSYTAPDGTVISLNYV-ADDDGGFKPEG 368
              D G       S  + SG  + +    +G     +  G++ + N++  +DD  FK E 
Sbjct: 157 IVPDPGGYPSLASS--QPSGTISFEHPNIKGL--NRSLIGSIATSNFLNPEDDLSFKLEY 212

Query: 369 VH 374
           VH
Sbjct: 213 VH 214


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,505,898
Number of Sequences: 28952
Number of extensions: 286291
Number of successful extensions: 614
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)