Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0230
         (385 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   2.4  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    21   3.2  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    20   7.4  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    20   7.4  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    20   9.7  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
 Frame = -3

Query: 335 CPGTTTSGRASVS---C*PPTCPGTGACIQSQTGHXC 234
           CP  T      ++   C P  C   G C+    G  C
Sbjct: 248 CPSGTLGYICEINVDDCRPGACHNNGTCLDKVGGFEC 284



 Score = 20.6 bits (41), Expect = 5.6
 Identities = 7/21 (33%), Positives = 7/21 (33%)
 Frame = -3

Query: 296 C*PPTCPGTGACIQSQTGHXC 234
           C    C   G C     GH C
Sbjct: 342 CATSPCQNGGVCTTIHAGHKC 362


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 9/43 (20%), Positives = 17/43 (39%)
 Frame = +2

Query: 59  TVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAE 187
           T+S  CK        +  H+ V F +++   ++    G    E
Sbjct: 31  TISQGCKACGYHSPLESNHKLVTFILKNPPNLNPAVQGSSLTE 73


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 8/24 (33%), Positives = 10/24 (41%)
 Frame = -2

Query: 219 PFCRSSRNCSYSALRSPTVSTSIC 148
           PF   SRNC         + T +C
Sbjct: 427 PFSAGSRNCIGQKFAMLEIKTVLC 450


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 8/24 (33%), Positives = 10/24 (41%)
 Frame = -2

Query: 219 PFCRSSRNCSYSALRSPTVSTSIC 148
           PF   SRNC         + T +C
Sbjct: 427 PFSAGSRNCIGQKFAMLEIKTVLC 450


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 19.8 bits (39), Expect = 9.7
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -2

Query: 336 VSGHHDIRKSFCFLLASDVPWHWCVY 259
           +S   D   + CFLL++ +   W +Y
Sbjct: 37  ISPRCDKISAICFLLSTILGTCWIIY 62


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,699
Number of Sequences: 336
Number of extensions: 1514
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8014124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)