Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0230
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|...    73   2e-14
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    37   0.001
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr...    26   2.3  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   2.3  
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     25   4.1  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    25   4.1  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    25   4.1  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    25   5.4  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    25   5.4  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    25   5.4  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    24   7.1  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    24   7.1  
SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces po...    24   7.1  
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch...    24   7.1  
SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces p...    24   9.4  
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem...    24   9.4  

>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 72.5 bits (170), Expect = 2e-14
 Identities = 41/112 (36%), Positives = 62/112 (55%)
 Frame = +2

Query: 50  SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTG 229
           SGV VS  C   ++E+K  K  RYVVF + D K   V      + +++ FL DL +    
Sbjct: 4   SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPE---K 60

Query: 230 ECXYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSNSFDAL 385
           +C Y ++DFE+ +  +G      + K+  +SW PD A +K KM+YS+S D L
Sbjct: 61  DCRYAIYDFEF-NLGEGV-----RNKIIFISWSPDVAPIKSKMVYSSSKDTL 106


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 37.1 bits (82), Expect = 0.001
 Identities = 27/86 (31%), Positives = 44/86 (51%)
 Frame = +2

Query: 116 RYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGECXYGLFDFEYTHQCQGTSEAS 295
           R  +  I +E   DV+T+ E++   E    D +K    EC  G  +  +        + S
Sbjct: 26  RAAIISISNENSFDVKTMVEKSESIES---DFKK--VRECLLGSEEPAFVL----VYDDS 76

Query: 296 KKQKLFLMSWCPDTAKVKKKMLYSNS 373
           KK  L L+S+ P+ A V++KMLY++S
Sbjct: 77  KKNLLQLISYVPENANVRRKMLYASS 102



 Score = 24.2 bits (50), Expect = 7.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 305 KLFLMSWCPDTAKVKKKMLYSNS 373
           K+  +  CP  A VK +M+YS+S
Sbjct: 244 KILFIYICPMQATVKHRMVYSSS 266


>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 14/61 (22%), Positives = 31/61 (50%)
 Frame = +2

Query: 77  KTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGECXYGLFDF 256
           K + + ++ + K ++     +D K+ D + +  +  EY  F ++L+   TG+  Y   DF
Sbjct: 108 KCSSDFLEANVKSQFTTCENKDSKE-DYQILHNKRLEYVSFNDELKSLETGQPLYCFQDF 166

Query: 257 E 259
           +
Sbjct: 167 Q 167


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -2

Query: 276 WHWCVYSKSNRPYXHSP--VPPFCRSSRNCSYSALRSPTVSTSICF 145
           W++  Y+ S R Y  +   VPP+CR         +R+     + CF
Sbjct: 122 WNFVDYALSLRKYGWTDDVVPPYCRKVLTYKSLGIRTAVYVGAFCF 167


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 59  TVSDACKTTYEEIKKDKKHRYV 124
           TV D C   +  IK   KH YV
Sbjct: 316 TVEDFCNNIHSSIKSQFKHAYV 337


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 56  VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDV 160
           VT  D  KT  +  +K  KH+ V  YIR  K +D+
Sbjct: 113 VTNDDGTKTKVDSDEKKHKHKNVRDYIR-FKHVDI 146


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -2

Query: 324 HDIRKSFCFLLASDVPWHWCVYSKSNRPYXHSP 226
           HD+     +++ S   +H C  ++S  P+ H P
Sbjct: 107 HDVASHPSYMVQSPTSYHACSNNQSPFPHSHHP 139


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 137 RDEKQIDVETVGERNAEYEQFLEDLQKGGT 226
           RD+KQ DVE + E +A+     + +  GG+
Sbjct: 277 RDQKQQDVEALQEYSAKLSLERDKISSGGS 306


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 11/48 (22%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 77  KTTYEEIKKDKKH-RYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQK 217
           K TY + KK  ++ R     ++  + +  + +  +  +YE FL++L++
Sbjct: 399 KKTYPQTKKKNRNWRLKTIGMQKAEDVKKQDIERQERDYELFLQNLEE 446


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -3

Query: 323 TTSGRASVSC*PPT 282
           TTSG  S SC PPT
Sbjct: 179 TTSGSTSTSCPPPT 192


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 248 FDFEYTHQCQGTSEASKKQKLFLMSW 325
           ++FE+  QC G+ + +    L ++SW
Sbjct: 350 YNFEHIRQCFGSRKLAISSILVILSW 375


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 110 KHRYVVFYIRDEKQIDVETVGE 175
           KH  + F++R  K  D+ T+GE
Sbjct: 236 KHAPIEFWLRMSKAADIFTIGE 257


>SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -1

Query: 193 FVFGVAFANRLDV 155
           F+FG+AFAN L++
Sbjct: 10  FLFGIAFANNLNI 22


>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 298

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
 Frame = +2

Query: 191 EQFLEDLQKGGTGECXYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAK--VKKKMLY 364
           E F+       +G C YG     YT+  Q     S     +L+ W     K  V+   LY
Sbjct: 45  EYFMSTTSTIASGHCEYGTKGITYTNHLQFILTIS-----YLVHWDLSQVKPLVENNRLY 99

Query: 365 SNSFDAL 385
               DAL
Sbjct: 100 QQRADAL 106


>SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 205

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +2

Query: 104 DKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGG 223
           D+K    + Y++D  +  +E + ER  E    L     GG
Sbjct: 90  DEKGIPFILYVKDSAKKQLEKIAERKPEENSVLRVTVDGG 129


>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
           membrane translocase Oxa101|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 62  VSDACKTTYEEIKKDKKHRYV 124
           V D  KT YE+++KD   R V
Sbjct: 322 VRDGFKTQYEQLQKDVSRRAV 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,371,997
Number of Sequences: 5004
Number of extensions: 23478
Number of successful extensions: 84
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)