Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0230
(385 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0752 - 27791126-27791167,27791792-27791863,27792771-277928... 85 2e-17
02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393 84 3e-17
03_06_0480 + 34218403-34218405,34219071-34219127,34220047-342203... 84 4e-17
12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666 83 7e-17
03_06_0174 - 32141956-32141985,32143658-32144452,32147645-321477... 82 1e-16
07_03_0397 + 17686852-17686888,17687452-17687701,17688168-17688318 79 9e-16
05_01_0103 + 686770-687017,687120-687270 78 2e-15
03_06_0479 + 34217170-34217172,34217337-34217786 76 8e-15
10_08_0658 - 19642103-19642259,19642831-19643102,19643346-19643378 63 8e-11
07_02_0007 - 11675832-11675988,11676719-11676975,11676989-11677084 47 4e-06
03_05_1112 + 30488678-30488806,30489047-30489228,30489310-304895... 28 2.2
09_04_0318 - 16620177-16620582,16620686-16620765,16620873-166212... 27 5.1
10_01_0274 - 2901033-2901778,2902475-2902634 27 6.7
04_03_0226 - 12977443-12977895 27 6.7
03_05_1166 - 30876802-30876899,30877233-30878685 26 8.9
03_02_0197 + 6337212-6337278,6339261-6340517,6340599-6340626,634... 26 8.9
02_01_0497 + 3607227-3607462,3607600-3607661,3608138-3608286,360... 26 8.9
>04_04_0752 -
27791126-27791167,27791792-27791863,27792771-27792855,
27792971-27793236,27794117-27794301,27794925-27795018,
27795193-27795284,27795401-27795539,27796101-27796385
Length = 419
Score = 85.0 bits (201), Expect = 2e-17
Identities = 41/112 (36%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Frame = +2
Query: 47 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGG 223
ASG+ V D CK ++E+K + R++ F I + +Q+ V+ +G+ Y+ F +
Sbjct: 269 ASGMAVGDECKLKFQELKSKRSFRFITFKIDERTQQVVVDRLGQPGDTYDDFTASMP--- 325
Query: 224 TGECXYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSNSFD 379
EC Y +FDF++ T E +K K+F +SW PDT+KV+ KMLY++S D
Sbjct: 326 ASECRYAVFDFDFV-----TDENCQKSKIFFISWSPDTSKVRSKMLYASSKD 372
>02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393
Length = 158
Score = 84.2 bits (199), Expect = 3e-17
Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Frame = +2
Query: 47 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGG 223
ASG+ V D CK + E+K + R++VF I ++ +Q+ V+ +G+ Y+ F L
Sbjct: 24 ASGMAVCDECKLKFLELKAKRSFRFIVFKINEKVQQVVVDRLGQPGESYDDFTACLP--- 80
Query: 224 TGECXYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSNSFD 379
EC Y +FDF++ T E +K K+F +SW PDT++V+ KMLY++S D
Sbjct: 81 ADECRYAVFDFDFV-----TDENCQKSKIFFISWAPDTSRVRSKMLYASSKD 127
>03_06_0480 +
34218403-34218405,34219071-34219127,34220047-34220312,
34220402-34220552
Length = 158
Score = 83.8 bits (198), Expect = 4e-17
Identities = 38/110 (34%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
Frame = +2
Query: 47 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGG 223
+SGV + D CK + E++ + HR++ F + ++ K+I V+ +G+R YE F L +G
Sbjct: 24 SSGVAIHDDCKLKFNELQSKRMHRFITFMMDNKGKEIIVDKIGDRTTSYEDFTSSLPEG- 82
Query: 224 TGECXYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSNS 373
+C + ++DF++ T+E K ++F + W PD AKV+ KMLY++S
Sbjct: 83 --DCRFAIYDFDFL-----TAEDVPKSRIFYILWSPDNAKVRSKMLYASS 125
>12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666
Length = 145
Score = 83.0 bits (196), Expect = 7e-17
Identities = 37/110 (33%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
Frame = +2
Query: 47 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGG 223
+SG+ V+ CK T+ E+++ K HRYV+F I D+ K++ VE G ++ F++ L +
Sbjct: 11 SSGIGVAAECKQTFLELQRKKSHRYVIFKIDDKCKEVVVEKTGSSTESFDDFMDSLPE-- 68
Query: 224 TGECXYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSNS 373
+C Y ++DF++ T E +K K+F ++W P ++++ KMLY+ S
Sbjct: 69 -SDCRYAIYDFDFV-----TEENCQKSKIFFVAWSPSVSRIRAKMLYATS 112
>03_06_0174 -
32141956-32141985,32143658-32144452,32147645-32147759,
32148134-32148399,32150193-32150213
Length = 408
Score = 82.2 bits (194), Expect = 1e-16
Identities = 43/123 (34%), Positives = 70/123 (56%), Gaps = 1/123 (0%)
Frame = +2
Query: 20 FLRE*HQKMASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQ 196
F+R H +SG+ V+ + T+ E++ K RYV+F I + +KQ+ VE G Y+
Sbjct: 3 FMRS-HSNASSGMGVAPDIRDTFLELQMKKAFRYVIFKIEEKQKQVVVEKTGATTESYDD 61
Query: 197 FLEDLQKGGTGECXYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSNSF 376
FL L + +C Y L+DF++ T E +K K+F ++W P T++++ KMLYS S
Sbjct: 62 FLASLPEN---DCRYALYDFDFV-----TGENVQKSKIFFIAWSPSTSRIRAKMLYSTSK 113
Query: 377 DAL 385
D +
Sbjct: 114 DRI 116
>07_03_0397 + 17686852-17686888,17687452-17687701,17688168-17688318
Length = 145
Score = 79.4 bits (187), Expect = 9e-16
Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 1/110 (0%)
Frame = +2
Query: 53 GVTVSDACKTTYEEIKKDKKHRYVVFYIRDEK-QIDVETVGERNAEYEQFLEDLQKGGTG 229
G+ V+D CK ++E+K + R++VF I D+ +I VE +G+ YE F L
Sbjct: 13 GLAVNDECKFKFQELKTRRGFRFIVFKIDDKAMEIKVERLGQTAEGYEDFAATLP---AD 69
Query: 230 ECXYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSNSFD 379
EC Y ++D ++ T E +K K+F SW PDTA+ + KMLY++S D
Sbjct: 70 ECRYAVYDLDFV-----TDENCQKSKIFFFSWSPDTARTRSKMLYASSKD 114
>05_01_0103 + 686770-687017,687120-687270
Length = 132
Score = 78.2 bits (184), Expect = 2e-15
Identities = 37/109 (33%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Frame = +2
Query: 56 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQ-IDVETVGERNAEYEQFLEDLQKGGTGE 232
+ V D CK + E+K + +R++++ I ++K+ + VE VGE Y+ F L E
Sbjct: 1 MAVDDECKLKFLELKAKRTYRFIIYKIDEKKKMVVVEKVGEPVLNYDDFAASLP---ANE 57
Query: 233 CXYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSNSFD 379
C Y +FD+++ T E +K K+F ++W PDT++V+ KM+Y++S D
Sbjct: 58 CRYAIFDYDFV-----TEENCQKSKIFFIAWSPDTSRVRSKMIYASSKD 101
>03_06_0479 + 34217170-34217172,34217337-34217786
Length = 150
Score = 76.2 bits (179), Expect = 8e-15
Identities = 40/115 (34%), Positives = 67/115 (58%), Gaps = 7/115 (6%)
Frame = +2
Query: 50 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGGT 226
SGV VS+ CK ++E++ + HR+VVF I D +Q+ V+ VG R+A +++ L G
Sbjct: 6 SGVAVSEECKARFQELRAGRAHRFVVFKIDDAMRQVVVDRVGPRDAGFDELTASLPADG- 64
Query: 227 GECXYGLFDFEYT-HQCQGTSEASK-----KQKLFLMSWCPDTAKVKKKMLYSNS 373
C Y ++D ++T T+ A + + K+F +SW P A V+ KM+Y++S
Sbjct: 65 --CRYAVYDHDFTVSDATATAAAGEGGEAPRSKIFFVSWSPAAADVRSKMVYASS 117
>10_08_0658 - 19642103-19642259,19642831-19643102,19643346-19643378
Length = 153
Score = 62.9 bits (146), Expect = 8e-11
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Frame = +2
Query: 56 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEK-QIDVETVGERNAEYEQFLEDLQKGGTGE 232
+ V + K+ + E+K+ K HRYV+F I D + +I VE G Y+ F L +
Sbjct: 20 IEVPEKSKSAFWELKRRKVHRYVIFKIDDRREEIVVEKTGAPGESYDDFTASLP---ADD 76
Query: 233 CXYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSNS 373
C Y ++D ++ + + +K K+F +SW P ++++ K +Y+ S
Sbjct: 77 CRYAVYDLDFV-----SDDNCRKSKIFFISWSPSVSRIRAKTIYAVS 118
>07_02_0007 - 11675832-11675988,11676719-11676975,11676989-11677084
Length = 169
Score = 47.2 bits (107), Expect = 4e-06
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Frame = +2
Query: 56 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEK-QIDVETVGERNAEYEQFLEDLQKGGTGE 232
+ V + K+ + E+ + K HRYV+F I D + +I VE G Y+ F L +
Sbjct: 40 IEVPEKSKSAFWELMRRKVHRYVIFKIDDRREEIVVEKTGAPWESYDDFTASL----PAD 95
Query: 233 CXYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYS 367
Y L DF C +K K+F +SW P + ++ K +Y+
Sbjct: 96 AVYDL-DFVSDDNC-------RKSKIFFISWSPSLSCIRAKTIYA 132
>03_05_1112 +
30488678-30488806,30489047-30489228,30489310-30489505,
30490095-30491117
Length = 509
Score = 28.3 bits (60), Expect = 2.2
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +2
Query: 83 TYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTG 229
T +++ +D+ + ++ EK D E + E NA YE+ + L+ G G
Sbjct: 140 TKQKVAEDENRNLIDRWML-EKMKDAERLNEANAMYEEMVLKLKSAGVG 187
>09_04_0318 -
16620177-16620582,16620686-16620765,16620873-16621213,
16621298-16621559
Length = 362
Score = 27.1 bits (57), Expect = 5.1
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = -3
Query: 332 PGTTTSGRASVSC*PPTCPGTG--ACIQSQTGHXCIPRYRPSA 210
P T +S S + PP P +G A S P +RPS+
Sbjct: 295 PATASSAATSSTAAPPAAPSSGGIAATSSSAAAAAAPDHRPSS 337
>10_01_0274 - 2901033-2901778,2902475-2902634
Length = 301
Score = 26.6 bits (56), Expect = 6.7
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 332 PGTTTSGRASVSC*PPTCPGTGA 264
P T G + +C PPT PG G+
Sbjct: 252 PSTPEYGTPATACPPPTAPGYGS 274
>04_03_0226 - 12977443-12977895
Length = 150
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 134 IRDEKQIDVETVGERNAEYEQFLEDLQKGG 223
+R+E +D+E G AE E+ DL+ GG
Sbjct: 112 MREEAAVDLEPGGGGGAEEEEAAVDLEPGG 141
>03_05_1166 - 30876802-30876899,30877233-30878685
Length = 516
Score = 26.2 bits (55), Expect = 8.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 104 PS*SPRKWSCKRPKLSHQTPFFDVIHVKIT 15
P+ S W ++P+ S +TP HVK T
Sbjct: 237 PNPSGEPWHTRKPRFSKETPASFCHHVKFT 266
>03_02_0197 +
6337212-6337278,6339261-6340517,6340599-6340626,
6340735-6340897
Length = 504
Score = 26.2 bits (55), Expect = 8.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 188 YEQFLEDLQKGGTGECXYGLFD 253
YE + ED + G T E +GLFD
Sbjct: 316 YELYDEDTRPGSTSEKYWGLFD 337
>02_01_0497 +
3607227-3607462,3607600-3607661,3608138-3608286,
3608418-3608538,3608638-3608793,3609041-3609086,
3609414-3609480,3609553-3609629,3610180-3610249,
3610956-3611014,3611105-3611213,3611552-3611611,
3611701-3611763,3612007-3612131,3612260-3612422,
3612506-3612565,3612802-3612860,3613057-3613138,
3613227-3613290,3613506-3613573,3613648-3613758
Length = 668
Score = 26.2 bits (55), Expect = 8.9
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -2
Query: 234 HSPVPPFCRSSRNCSYSALRSPT 166
H PPF RS + S SA R PT
Sbjct: 337 HPAAPPFSRSPSSRSSSASRQPT 359
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,228,012
Number of Sequences: 37544
Number of extensions: 166033
Number of successful extensions: 595
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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