BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0230 (385 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20) 43 7e-05 SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 1e-04 SB_55463| Best HMM Match : OPA3 (HMM E-Value=0) 42 1e-04 SB_30343| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001 SB_36002| Best HMM Match : Peptidase_A17 (HMM E-Value=9.3e-41) 33 0.080 SB_20964| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.080 SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.14 SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.43 SB_12736| Best HMM Match : Peptidase_A17 (HMM E-Value=3.1e-11) 30 0.56 SB_46360| Best HMM Match : EGF (HMM E-Value=0) 29 0.98 SB_6077| Best HMM Match : EGF (HMM E-Value=0) 29 0.98 SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013) 29 1.7 SB_56973| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.0 SB_50709| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2 SB_37875| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2 SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2 SB_37321| Best HMM Match : Pkinase (HMM E-Value=2.4e-27) 27 5.2 SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2 SB_28483| Best HMM Match : Filament (HMM E-Value=0.0082) 27 6.9 SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9 SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9 SB_43866| Best HMM Match : Gelsolin (HMM E-Value=0.092) 26 9.2 SB_36746| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2 SB_28664| Best HMM Match : Antimicrobial_1 (HMM E-Value=2.6) 26 9.2 SB_20553| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2 >SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20) Length = 151 Score = 43.2 bits (97), Expect = 7e-05 Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 7/117 (5%) Frame = +2 Query: 50 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDV-----ETVGERNAEYEQ--FLED 208 SG+ V D + +K K H+Y +F I DE + V ++V E ++ F + Sbjct: 4 SGIKVDDESLKLSQTMKSMKTHKYAIFKICDEANMVVIDQTFKSVVTNTREEDRAIFYQM 63 Query: 209 LQKGGTGECXYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSNSFD 379 ++K E Y L+D ++ + E L +SWC D A ++KKM +++ D Sbjct: 64 VEKLSDREPRYILYDMKFPRK----EEKRIFNNLVFISWCSDKAPIEKKMKLASTQD 116 >SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 150 Score = 42.7 bits (96), Expect = 1e-04 Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 11/115 (9%) Frame = +2 Query: 50 SGVTVSDACKTTYEEIK-KDKKHRYVVFYIRDE----------KQIDVETVGERNAEYEQ 196 SG+ + D Y+ ++ K+K H++ F I D+ K++D T E A ++Q Sbjct: 4 SGIKIDDESLHLYQTMQGKEKSHKFATFKISDDGKMVVIDHILKRVDTHTREEDRAIFDQ 63 Query: 197 FLEDLQKGGTGECXYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKML 361 LE L E Y L+D + + + L + WC D A +KK+M+ Sbjct: 64 MLEKLSDS---EPRYILYDLNFPRK-----DGRAFHHLVYIFWCSDNAPIKKRMV 110 >SB_55463| Best HMM Match : OPA3 (HMM E-Value=0) Length = 387 Score = 42.3 bits (95), Expect = 1e-04 Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 3/114 (2%) Frame = +2 Query: 44 MASGVTVSDACKTTYEEIKKDKKH-RYVVFYIRDEKQIDVETVGERNAE--YEQFLEDLQ 214 M +G+ + + EIKK RY++F + ++K+ V + E +E L+DL Sbjct: 247 MEAGLNIKGEVTDGWNEIKKAASGLRYIIFKMDEKKENVVFEKKKMKCECSHEDVLDDLP 306 Query: 215 KGGTGECXYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSNSF 376 E Y + +Y + E + + KL L+ WCPD ++K +M+ + +F Sbjct: 307 ---ADEPRYIALNLDYKNV-----EGADRSKLVLIFWCPDNCEIKSRMVSAATF 352 >SB_30343| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 140 Score = 39.5 bits (88), Expect = 0.001 Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 3/112 (2%) Frame = +2 Query: 50 SGVTVSDACKTTYEEIKKDKKH-RYVVFYIRDEKQIDVETVGERNAE--YEQFLEDLQKG 220 +G+ + + EIK RY +F + ++K+ V + E ++ L+DL Sbjct: 2 AGLNIKSDVTDGWNEIKMVASGLRYTIFKMDEKKENVVMEKKKMITECCHDDVLDDLP-- 59 Query: 221 GTGECXYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSNSF 376 T E Y + +Y ++ E +++ KL L+ WCPD +K KM+ + +F Sbjct: 60 -TDEPRYVALNLDYKNE-----EGAERSKLVLIFWCPDNCGIKNKMVSAATF 105 >SB_36002| Best HMM Match : Peptidase_A17 (HMM E-Value=9.3e-41) Length = 193 Score = 33.1 bits (72), Expect = 0.080 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Frame = +2 Query: 155 DVETVGERNAEYEQFLEDLQKGGT---GECXYGLFDFEYTHQCQGTSEASKK 301 D E GER + +L+DL++ C YG+ E T+ G +ASKK Sbjct: 83 DEELTGERKKRWLSWLDDLKRVKEVRIARCVYGVSGAEVTYSLHGFGDASKK 134 >SB_20964| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 311 Score = 33.1 bits (72), Expect = 0.080 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Frame = +2 Query: 155 DVETVGERNAEYEQFLEDLQKGGT---GECXYGLFDFEYTHQCQGTSEASKK 301 D E GER + +L+DL++ C YG+ E T+ G +ASKK Sbjct: 139 DEELTGERKKRWLSWLDDLKRVKEVRIARCVYGVSGAEVTYSLHGFGDASKK 190 >SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1681 Score = 32.3 bits (70), Expect = 0.14 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Frame = +2 Query: 155 DVETVGERNAEYEQFLEDLQKGGT---GECXYGLFDFEYTHQCQGTSEASKK 301 D E GER + +L+DL++ C YG + E T+ G +ASKK Sbjct: 422 DEELTGERKKRWLSWLDDLKRVKEVRIARCVYGGSEAEVTYSLHGFGDASKK 473 >SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 237 Score = 30.7 bits (66), Expect = 0.43 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%) Frame = -2 Query: 327 HHDIRKSFCFLLASDVPWHWCVYSKSNRPYXHSPVP-PFCRS 205 H + + +C+ S V +C +S +RPY HSPV P+C S Sbjct: 130 HSPVDRPYCY---SPVDHPYC-HSPVDRPYCHSPVDRPYCHS 167 Score = 30.3 bits (65), Expect = 0.56 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Frame = -2 Query: 324 HDIRKSFCFLLASDVPWHWCVYSKSNRPYXHSPVP-PFCRS--SRNCSYSALRSP 169 H + +C S V +C YS +RPY HSPV P+C S R YS + P Sbjct: 95 HSWSRPYCH---SPVDRPYC-YSPVDRPYCHSPVDRPYCHSPVDRPYCYSPVDHP 145 Score = 27.1 bits (57), Expect = 5.2 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%) Frame = -2 Query: 288 SDVPWHWCVYSKSNRPYXHSPVP-PFCRS 205 S V +C +S +RPY HSPV P+C S Sbjct: 149 SPVDRPYC-HSPVDRPYCHSPVDRPYCHS 176 >SB_12736| Best HMM Match : Peptidase_A17 (HMM E-Value=3.1e-11) Length = 597 Score = 30.3 bits (65), Expect = 0.56 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%) Frame = +2 Query: 143 EKQIDVETVGERNAEYEQFLEDLQKGGT---GECXYGLFDFEYTHQCQGTSEASKK 301 E ++ GER + +L+DL++ C YG+ E T+ G +ASKK Sbjct: 222 EVRLGRRLTGERKKRWLSWLDDLKRVKEVRIARCVYGVSGAEVTYSLHGFGDASKK 277 >SB_46360| Best HMM Match : EGF (HMM E-Value=0) Length = 352 Score = 29.5 bits (63), Expect = 0.98 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%) Frame = -3 Query: 335 CPGTTTSGRASVS-C*PPTCPGTGACIQSQTGHXCI 231 CP T VS C C G+C+ +Q+G+ C+ Sbjct: 189 CPTGVTGRHCDVSICDSKPCRNNGSCVLTQSGYQCL 224 >SB_6077| Best HMM Match : EGF (HMM E-Value=0) Length = 1165 Score = 29.5 bits (63), Expect = 0.98 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%) Frame = -3 Query: 335 CPGTTTSGRASVS-C*PPTCPGTGACIQSQTGHXCI 231 CP T VS C C G+C+ +Q+G+ C+ Sbjct: 1002 CPTGVTGRHCDVSICDSKPCRNNGSCVLTQSGYQCL 1037 >SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013) Length = 310 Score = 28.7 bits (61), Expect = 1.7 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +2 Query: 266 HQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSNSFDAL 385 H+ Q A FL C D A +KKKML ++++ L Sbjct: 241 HKTQDHRSALSDLVFFLFDRCSDEAPIKKKMLAGSTWEYL 280 >SB_56973| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 628 Score = 27.5 bits (58), Expect = 4.0 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%) Frame = -3 Query: 338 RCPGTTTSG-RASVSC*PPTCPGTGAC 261 +CP T + G R V C P CP T C Sbjct: 484 QCPKTLSCGHRCGVECHPGACPDTLVC 510 >SB_50709| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 953 Score = 27.1 bits (57), Expect = 5.2 Identities = 9/27 (33%), Positives = 14/27 (51%) Frame = -3 Query: 311 RASVSC*PPTCPGTGACIQSQTGHXCI 231 +A+V C P C G C++ G C+ Sbjct: 652 KATVDCKPGACRNNGKCVEIPGGFQCL 678 >SB_37875| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 544 Score = 27.1 bits (57), Expect = 5.2 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +2 Query: 212 QKGGTGECXYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDT 337 +K GTG G FDF H+ + + A ++MS DT Sbjct: 180 KKDGTGTTITGEFDFPVRHKAEIINIAVASNGKYIMSCSKDT 221 >SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 266 Score = 27.1 bits (57), Expect = 5.2 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 3/36 (8%) Frame = -2 Query: 303 CFLLASDVPWHWCVYSKSN---RPYXHSPVPPFCRS 205 C++ + + H C+ + RPY H P PPF S Sbjct: 28 CYIFCNGLMDHLCLCNALGSPYRPYPHPPHPPFTSS 63 >SB_37321| Best HMM Match : Pkinase (HMM E-Value=2.4e-27) Length = 592 Score = 27.1 bits (57), Expect = 5.2 Identities = 23/78 (29%), Positives = 32/78 (41%) Frame = -2 Query: 234 HSPVPPFCRSSRNCSYSALRSPTVSTSICFSSRM*KTT*RCFLSFLISS*VVLQASETVT 55 HSP R + C Y+ SP V TS F +R + R F S V + S T Sbjct: 392 HSPATTNMRRAIMCPYAPSTSPRV-TSTTFRTRHRTLSARFFSDVPESHVYVHRISCLRT 450 Query: 54 PDAIF*CYSRKNYTTNFT 1 + +F C + Y F+ Sbjct: 451 SNLVFTCIESRVYVHRFS 468 >SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 441 Score = 27.1 bits (57), Expect = 5.2 Identities = 11/34 (32%), Positives = 14/34 (41%) Frame = -3 Query: 335 CPGTTTSGRASVSC*PPTCPGTGACIQSQTGHXC 234 C GT + + C C +G C QS G C Sbjct: 211 CGGTNCTQKCGKDCQQVVCSASGKCDQSCDGEGC 244 >SB_28483| Best HMM Match : Filament (HMM E-Value=0.0082) Length = 478 Score = 26.6 bits (56), Expect = 6.9 Identities = 15/49 (30%), Positives = 23/49 (46%) Frame = +2 Query: 89 EEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGEC 235 E ++ + KH V I +E Q+++ET+ E LE T EC Sbjct: 263 EIVELESKHSAHVEEILEEHQLEIETIKADYEEQRSALETKLFAVTSEC 311 >SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1569 Score = 26.6 bits (56), Expect = 6.9 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +2 Query: 275 QGTSEASKKQKLFLMSWCPDTAKVKK 352 QGT + KQ L +W PD A++K+ Sbjct: 358 QGTDMLTDKQWERLANWLPDRARIKR 383 >SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 929 Score = 26.6 bits (56), Expect = 6.9 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 4/64 (6%) Frame = +2 Query: 38 QKMASGVTVSDACKTTYEEIKKD--KKHRYVVFYIRDEKQIDVETVG--ERNAEYEQFLE 205 QK V D + + +E KD KK +Y+ + DE+ D + + + EY+ + E Sbjct: 287 QKKDDSVKDEDEEEESEQEEDKDEEKKVKYLTYESSDEQMYDTDDLNDDDTRGEYDDYEE 346 Query: 206 DLQK 217 L+K Sbjct: 347 MLRK 350 >SB_43866| Best HMM Match : Gelsolin (HMM E-Value=0.092) Length = 341 Score = 26.2 bits (55), Expect = 9.2 Identities = 12/39 (30%), Positives = 23/39 (58%) Frame = +2 Query: 155 DVETVGERNAEYEQFLEDLQKGGTGECXYGLFDFEYTHQ 271 +VET E++ + E+ +++ ++ G E L FE TH+ Sbjct: 151 EVETTTEQDKQPEEVVKNSEEEGNHEDQEPLLSFEDTHE 189 >SB_36746| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 220 Score = 26.2 bits (55), Expect = 9.2 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Frame = -2 Query: 348 LTLAVSGHHDIRKSFCFLLASDVPWHWCVYSKSNRPYXHSPVPPFC-RSSRNCSYSA 181 L VS + I S LA+D+P +C+ ++ P P+C S +C+ +A Sbjct: 92 LAAIVSTPYCINYSTDCTLAADIPTPYCINYSTDCPLAADVPTPYCINYSTDCTLAA 148 >SB_28664| Best HMM Match : Antimicrobial_1 (HMM E-Value=2.6) Length = 92 Score = 26.2 bits (55), Expect = 9.2 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = -2 Query: 216 FCRSSRNCSYSALRSPTVSTSICFSSRM 133 FCR ++ C ALRS T + + +RM Sbjct: 65 FCRFTKGCRQPALRSATTTPATTRQARM 92 >SB_20553| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 445 Score = 26.2 bits (55), Expect = 9.2 Identities = 13/32 (40%), Positives = 15/32 (46%) Frame = -2 Query: 267 CVYSKSNRPYXHSPVPPFCRSSRNCSYSALRS 172 CVY PY S +PP +S S LRS Sbjct: 292 CVYGWVALPYMSSTLPPVAYTSSGLSAGPLRS 323 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,723,083 Number of Sequences: 59808 Number of extensions: 199939 Number of successful extensions: 785 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 710 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 776 length of database: 16,821,457 effective HSP length: 74 effective length of database: 12,395,665 effective search space used: 656970245 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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