Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0230
         (385 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.       94   3e-20
AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated...    94   3e-20
L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.       64   2e-11
AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated...    64   2e-11
AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated...    64   2e-11
Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical p...    30   0.64 
Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical pr...    30   0.64 
AC024792-3|AAF60684.2|  388|Caenorhabditis elegans Hypothetical ...    28   2.6  
Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z98877-4|CAB54473.2|  796|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z82083-9|CAB04975.1|  635|Caenorhabditis elegans Hypothetical pr...    26   7.9  
Z81503-6|CAB04115.1|  635|Caenorhabditis elegans Hypothetical pr...    26   7.9  
AL023813-1|CAA19425.2|  188|Caenorhabditis elegans Hypothetical ...    26   7.9  

>L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.
          Length = 152

 Score = 93.9 bits (223), Expect = 3e-20
 Identities = 47/117 (40%), Positives = 70/117 (59%), Gaps = 3/117 (2%)
 Frame = +2

Query: 44  MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK- 217
           MASGV V  +CK  Y+ +    +H Y++F I +++  I VE VGE+NA Y +F+E+++K 
Sbjct: 1   MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60

Query: 218 -GGTGECXYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSNSFDAL 385
                EC Y   D E T Q QG    S   K+  + +CPD A V+++MLY++S  AL
Sbjct: 61  VEDGKECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRAL 117


>AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated
           protein 60, isoform c protein.
          Length = 152

 Score = 93.9 bits (223), Expect = 3e-20
 Identities = 47/117 (40%), Positives = 70/117 (59%), Gaps = 3/117 (2%)
 Frame = +2

Query: 44  MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK- 217
           MASGV V  +CK  Y+ +    +H Y++F I +++  I VE VGE+NA Y +F+E+++K 
Sbjct: 1   MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60

Query: 218 -GGTGECXYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSNSFDAL 385
                EC Y   D E T Q QG    S   K+  + +CPD A V+++MLY++S  AL
Sbjct: 61  VEDGKECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRAL 117


>L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.
          Length = 165

 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 40/131 (30%), Positives = 73/131 (55%), Gaps = 17/131 (12%)
 Frame = +2

Query: 44  MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN------------- 181
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE    ++             
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59

Query: 182 -AEYEQFLEDLQK--GGTGECXYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKK 352
            A +++F+ED++       +C Y +FDF++T    G    SK  K+  +  CPD A +KK
Sbjct: 60  KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKK 118

Query: 353 KMLYSNSFDAL 385
           KM+Y++S  A+
Sbjct: 119 KMVYASSAAAI 129


>AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated
           protein 60, isoform a protein.
          Length = 165

 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 40/131 (30%), Positives = 73/131 (55%), Gaps = 17/131 (12%)
 Frame = +2

Query: 44  MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN------------- 181
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE    ++             
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59

Query: 182 -AEYEQFLEDLQK--GGTGECXYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKK 352
            A +++F+ED++       +C Y +FDF++T    G    SK  K+  +  CPD A +KK
Sbjct: 60  KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKK 118

Query: 353 KMLYSNSFDAL 385
           KM+Y++S  A+
Sbjct: 119 KMVYASSAAAI 129


>AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated
           protein 60, isoform b protein.
          Length = 212

 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 40/131 (30%), Positives = 73/131 (55%), Gaps = 17/131 (12%)
 Frame = +2

Query: 44  MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN------------- 181
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE    ++             
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59

Query: 182 -AEYEQFLEDLQK--GGTGECXYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKK 352
            A +++F+ED++       +C Y +FDF++T    G    SK  K+  +  CPD A +KK
Sbjct: 60  KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKK 118

Query: 353 KMLYSNSFDAL 385
           KM+Y++S  A+
Sbjct: 119 KMVYASSAAAI 129



 Score = 32.3 bits (70), Expect = 0.12
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = +2

Query: 269 QCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSNSFDAL 385
           Q    SE S K+   L++ CPD A V+++MLY++S  AL
Sbjct: 142 QVSDESEMSHKE---LLNNCPDNAPVRRRMLYASSVRAL 177


>Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 258 SKSNRPYXHSPVPPFCRSSRNCSYSALRSPTVST 157
           S  N P  HSP PPF  S  N SY+ ++  T +T
Sbjct: 188 SHHNIPIRHSPAPPFTTS--NSSYNNIKKSTDNT 219


>Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 258 SKSNRPYXHSPVPPFCRSSRNCSYSALRSPTVST 157
           S  N P  HSP PPF  S  N SY+ ++  T +T
Sbjct: 188 SHHNIPIRHSPAPPFTTS--NSSYNNIKKSTDNT 219


>AC024792-3|AAF60684.2|  388|Caenorhabditis elegans Hypothetical
           protein Y48G1A.3 protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 260 YTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLY 364
           + H   G+ E    + +F  S  PD+ K KKK+LY
Sbjct: 161 FIHSLCGSHEIHPVKIIFRFSKYPDSLKYKKKILY 195


>Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical
           protein Y69H2.3c protein.
          Length = 731

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -3

Query: 338 RCPGTTTSGRASVSC*PPTCPGTGACI 258
           RC   TT   A V C    CP   ACI
Sbjct: 320 RCSAGTTCQEALVKCAKAPCPSHAACI 346


>Z98877-4|CAB54473.2|  796|Caenorhabditis elegans Hypothetical
           protein Y69H2.3b protein.
          Length = 796

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -3

Query: 338 RCPGTTTSGRASVSC*PPTCPGTGACI 258
           RC   TT   A V C    CP   ACI
Sbjct: 385 RCSAGTTCQEALVKCAKAPCPSHAACI 411


>Z82083-9|CAB04975.1|  635|Caenorhabditis elegans Hypothetical
           protein ZK1010.9 protein.
          Length = 635

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 326 TTTSGRASVSC*PPTCPGTGACIQSQTGHXCIPRYRPSADPRG 198
           TTT+G ++ S  PPT P      ++ T     P+ +P+    G
Sbjct: 9   TTTTGSSAPSVIPPTAPTASVKTKAPTKGPVQPQKKPTTVDNG 51


>Z81503-6|CAB04115.1|  635|Caenorhabditis elegans Hypothetical
           protein ZK1010.9 protein.
          Length = 635

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 326 TTTSGRASVSC*PPTCPGTGACIQSQTGHXCIPRYRPSADPRG 198
           TTT+G ++ S  PPT P      ++ T     P+ +P+    G
Sbjct: 9   TTTTGSSAPSVIPPTAPTASVKTKAPTKGPVQPQKKPTTVDNG 51


>AL023813-1|CAA19425.2|  188|Caenorhabditis elegans Hypothetical
           protein H02K04.1 protein.
          Length = 188

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = -3

Query: 326 TTTSGRASVSC*PPTCPGTGACIQSQTGHXCIPRYRPSA 210
           TTT+   + +  PP CP      Q   G  C    RP A
Sbjct: 30  TTTTATTTTTAPPPVCPDGWFSFQRANGLWCYIIARPPA 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,846,999
Number of Sequences: 27780
Number of extensions: 146010
Number of successful extensions: 567
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)