Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0230
         (385 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   3.7  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   4.9  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   4.9  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 16/57 (28%), Positives = 22/57 (38%)
 Frame = +2

Query: 71  ACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGECXY 241
           +C        K+K  RY   Y   EK ++  T  +R   Y +  E  QK    E  Y
Sbjct: 3   SCSKDRNREYKEKDRRYEKLYNEKEKLLEERTSRKR---YSRSREREQKSYKNERKY 56


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 282 VPWHWCVYSKSNRPYXH 232
           +P HW VY + N P  H
Sbjct: 33  IPEHWLVYPEPN-PSLH 48


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 219 PFCRSSRNCSYSALR 175
           P+CR + +C YS  R
Sbjct: 9   PYCRRNFSCYYSLKR 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,591
Number of Sequences: 438
Number of extensions: 1815
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)