Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0230
(385 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59890.1 68418.m07510 actin-depolymerizing factor 4 (ADF4) id... 94 3e-20
At3g46010.1 68416.m04978 actin-depolymerizing factor 1 (ADF1) id... 92 1e-19
At5g59890.2 68418.m07511 actin-depolymerizing factor 4 (ADF4) id... 88 2e-18
At5g59880.1 68418.m07508 actin-depolymerizing factor 3 (ADF3) id... 85 2e-17
At2g31200.1 68415.m03810 actin-depolymerizing factor 6 (ADF6) id... 85 2e-17
At1g01750.1 68414.m00094 actin-depolymerizing factor, putative s... 85 2e-17
At4g00680.1 68417.m00093 actin-depolymerizing factor, putative s... 84 4e-17
At3g46000.1 68416.m04977 actin-depolymerizing factor, putative (... 84 4e-17
At5g52360.1 68418.m06497 actin-depolymerizing factor, putative s... 83 8e-17
At4g25590.1 68417.m03687 actin-depolymerizing factor, putative s... 77 3e-15
At2g16700.1 68415.m01916 actin-depolymerizing factor 5 (ADF5) id... 76 9e-15
At5g59880.2 68418.m07509 actin-depolymerizing factor 3 (ADF3) id... 71 2e-13
At4g34970.1 68417.m04957 actin-depolymerizing factor, putative s... 70 6e-13
At3g45990.1 68416.m04976 actin-depolymerizing factor, putative s... 63 7e-11
At3g03290.1 68416.m00326 universal stress protein (USP) family p... 31 0.20
At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger) fa... 28 2.5
At4g08350.1 68417.m01380 KOW domain-containing transcription fac... 27 5.7
At1g44835.1 68414.m05136 YbaK/prolyl-tRNA synthetase family prot... 27 5.7
At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger) fa... 26 9.9
>At5g59890.1 68418.m07510 actin-depolymerizing factor 4 (ADF4)
identical to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}
Length = 139
Score = 93.9 bits (223), Expect = 3e-20
Identities = 46/112 (41%), Positives = 69/112 (61%), Gaps = 1/112 (0%)
Frame = +2
Query: 47 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 223
ASG+ V D CK + E+K + HR++V+ I + +KQ+ VE VGE YE F L
Sbjct: 5 ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLP--- 61
Query: 224 TGECXYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSNSFD 379
EC Y ++DF++ T+E +K K+F ++WCPD AKV+ KM+Y++S D
Sbjct: 62 ADECRYAIYDFDFV-----TAENCQKSKIFFIAWCPDVAKVRSKMIYASSKD 108
>At3g46010.1 68416.m04978 actin-depolymerizing factor 1 (ADF1)
identical to SP|Q39250 Actin-depolymerizing factor 1
(ADF-1) (AtADF1) {Arabidopsis thaliana}
Length = 139
Score = 91.9 bits (218), Expect = 1e-19
Identities = 45/112 (40%), Positives = 70/112 (62%), Gaps = 1/112 (0%)
Frame = +2
Query: 47 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 223
ASG+ V D CK + E+K + HR++V+ I + +KQ+ VE VG+ YE+F L
Sbjct: 5 ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLP--- 61
Query: 224 TGECXYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSNSFD 379
EC Y ++DF++ T+E +K K+F ++WCPD AKV+ KM+Y++S D
Sbjct: 62 ADECRYAIYDFDFV-----TAENCQKSKIFFIAWCPDIAKVRSKMIYASSKD 108
>At5g59890.2 68418.m07511 actin-depolymerizing factor 4 (ADF4)
identical to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}
Length = 132
Score = 88.2 bits (209), Expect = 2e-18
Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 1/109 (0%)
Frame = +2
Query: 56 VTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGGTGE 232
+ V D CK + E+K + HR++V+ I + +KQ+ VE VGE YE F L E
Sbjct: 1 MAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLP---ADE 57
Query: 233 CXYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSNSFD 379
C Y ++DF++ T+E +K K+F ++WCPD AKV+ KM+Y++S D
Sbjct: 58 CRYAIYDFDFV-----TAENCQKSKIFFIAWCPDVAKVRSKMIYASSKD 101
>At5g59880.1 68418.m07508 actin-depolymerizing factor 3 (ADF3)
identical to SP|Q9ZSK4 Actin-depolymerizing factor 3
(ADF 3) (AtADF3) {Arabidopsis thaliana}
Length = 139
Score = 85.0 bits (201), Expect = 2e-17
Identities = 40/112 (35%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Frame = +2
Query: 47 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 223
ASG+ V D CK + E+K + HR++++ I + +KQ+ VE +GE +E L
Sbjct: 5 ASGMAVHDDCKLKFMELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASLP--- 61
Query: 224 TGECXYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSNSFD 379
EC Y +FDF++ +SE + ++F ++W PDTA+V+ KM+Y++S D
Sbjct: 62 ADECRYAIFDFDFV-----SSEGVPRSRIFFVAWSPDTARVRSKMIYASSKD 108
>At2g31200.1 68415.m03810 actin-depolymerizing factor 6 (ADF6)
identical to SP|Q9ZSK2 Actin-depolymerizing factor 6
(ADF-6) (AtADF6) {Arabidopsis thaliana}
Length = 146
Score = 85.0 bits (201), Expect = 2e-17
Identities = 44/113 (38%), Positives = 66/113 (58%), Gaps = 1/113 (0%)
Frame = +2
Query: 50 SGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQKGGT 226
SG+ V+D KTT+ E+++ K HRYVVF I +K++ VE G Y+ FL L
Sbjct: 13 SGMGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESYDDFLASLP---D 69
Query: 227 GECXYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSNSFDAL 385
+C Y ++DF++ TSE +K K+F +W P T+ ++ K+LYS S D L
Sbjct: 70 NDCRYAVYDFDFV-----TSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQL 117
>At1g01750.1 68414.m00094 actin-depolymerizing factor, putative
strong similarity to SP|P30175 Actin-depolymerizing
factor (ADF) {Lilium longiflorum}; contains Pfam profile
PF00241: Cofilin/tropomyosin-type actin-binding protein
Length = 140
Score = 84.6 bits (200), Expect = 2e-17
Identities = 43/113 (38%), Positives = 70/113 (61%), Gaps = 2/113 (1%)
Frame = +2
Query: 47 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEK--QIDVETVGERNAEYEQFLEDLQKG 220
ASG+ VSD CK + E+K + +R++VF I DEK Q+ ++ +G YE F + +
Sbjct: 5 ASGMHVSDECKLKFLELKAKRNYRFIVFKI-DEKAQQVMIDKLGNPEETYEDFTRSIPED 63
Query: 221 GTGECXYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSNSFD 379
EC Y ++D+++T T E +K K+F ++W PDT++V+ KMLY++S D
Sbjct: 64 ---ECRYAVYDYDFT-----TPENCQKSKIFFIAWSPDTSRVRSKMLYASSKD 108
>At4g00680.1 68417.m00093 actin-depolymerizing factor, putative
strong similarity to SP|P30175 Actin-depolymerizing
factor (ADF) {Lilium longiflorum}; contains Pfam profile
PF00241: Cofilin/tropomyosin-type actin-binding protein
Length = 140
Score = 83.8 bits (198), Expect = 4e-17
Identities = 42/113 (37%), Positives = 69/113 (61%), Gaps = 2/113 (1%)
Frame = +2
Query: 47 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEK--QIDVETVGERNAEYEQFLEDLQKG 220
ASG+ V+D CK + E+K + +R++VF I DEK Q+ +E +G Y+ F +
Sbjct: 5 ASGMHVNDECKIKFLELKAKRTYRFIVFKI-DEKAQQVQIEKLGNPEETYDDFTSSIPDD 63
Query: 221 GTGECXYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSNSFD 379
EC Y ++DF++T T + +K K+F ++W PDT++V+ KMLY++S D
Sbjct: 64 ---ECRYAVYDFDFT-----TEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKD 108
>At3g46000.1 68416.m04977 actin-depolymerizing factor, putative
(ADF2) strong similarity to SP|Q9ZSK3
Actin-depolymerizing factor 4 (ADF-4) (AtADF4)
{Arabidopsis thaliana}; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 137
Score = 83.8 bits (198), Expect = 4e-17
Identities = 43/111 (38%), Positives = 66/111 (59%)
Frame = +2
Query: 47 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGT 226
ASG+ V D CK + E+K + R +V+ I D KQ+ VE +GE Y+ F L
Sbjct: 5 ASGMAVHDDCKLKFMELKAKRTFRTIVYKIED-KQVIVEKLGEPEQSYDDFAASLP---A 60
Query: 227 GECXYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSNSFD 379
+C Y ++DF++ T+E +K K+F ++W PDTAKV+ KM+Y++S D
Sbjct: 61 DDCRYCIYDFDFV-----TAENCQKSKIFFIAWSPDTAKVRDKMIYASSKD 106
>At5g52360.1 68418.m06497 actin-depolymerizing factor, putative
strong similarity to pollen specific
actin-depolymerizing factor 2 [Nicotiana tabacum]
GI:22857914; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 137
Score = 82.6 bits (195), Expect = 8e-17
Identities = 40/111 (36%), Positives = 68/111 (61%)
Frame = +2
Query: 47 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGT 226
ASG+ V D CK + E+K + +R+++F I D +Q+ VE +G Y+ F L
Sbjct: 5 ASGMAVEDECKLKFLELKAKRNYRFIIFRI-DGQQVVVEKLGSPQENYDDFTNYLPPN-- 61
Query: 227 GECXYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSNSFD 379
EC Y ++DF++T T+E +K K+F ++W PD+++V+ KM+Y++S D
Sbjct: 62 -ECRYAVYDFDFT-----TAENIQKSKIFFIAWSPDSSRVRMKMVYASSKD 106
>At4g25590.1 68417.m03687 actin-depolymerizing factor, putative
strong similarity to pollen specific
actin-depolymerizing factor 2 [Nicotiana tabacum]
GI:22857914; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 130
Score = 77.4 bits (182), Expect = 3e-15
Identities = 37/108 (34%), Positives = 64/108 (59%)
Frame = +2
Query: 56 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGEC 235
+ V D CK + E+K + +R+++F I D +Q+ VE +G + Y+ F L EC
Sbjct: 1 MAVEDECKLKFLELKSKRNYRFIIFRI-DGQQVVVEKLGNPDETYDDFTASLP---ANEC 56
Query: 236 XYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSNSFD 379
Y +FDF++ T E +K K+F ++W PD+++V+ KM+Y++S D
Sbjct: 57 RYAVFDFDFI-----TDENCQKSKIFFIAWSPDSSRVRMKMVYASSKD 99
>At2g16700.1 68415.m01916 actin-depolymerizing factor 5 (ADF5)
identical to SP|Q9ZNT3 Actin-depolymerizing factor 5
(ADF-5) (AtADF5) {Arabidopsis thaliana}
Length = 143
Score = 75.8 bits (178), Expect = 9e-15
Identities = 38/117 (32%), Positives = 69/117 (58%), Gaps = 2/117 (1%)
Frame = +2
Query: 41 KMAS-GVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQ 214
KMA+ G+ V+D C +++ ++K K HRY+VF I ++ +++ V+ VG Y + L
Sbjct: 6 KMATTGMRVTDECTSSFMDMKWKKVHRYIVFKIEEKSRKVTVDKVGGAGESYHDLEDSLP 65
Query: 215 KGGTGECXYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSNSFDAL 385
+C Y +FDF++ T + +K K+F ++W P+ +K++ K+LY+ S D L
Sbjct: 66 ---VDDCRYAVFDFDFV-----TVDNCRKSKIFFIAWSPEASKIRAKILYATSKDGL 114
>At5g59880.2 68418.m07509 actin-depolymerizing factor 3 (ADF3)
identical to SP|Q9ZSK4 Actin-depolymerizing factor 3
(ADF 3) (AtADF3) {Arabidopsis thaliana}
Length = 124
Score = 71.3 bits (167), Expect = 2e-13
Identities = 34/100 (34%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Frame = +2
Query: 47 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 223
ASG+ V D CK + E+K + HR++++ I + +KQ+ VE +GE +E L
Sbjct: 5 ASGMAVHDDCKLKFMELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASLP--- 61
Query: 224 TGECXYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAK 343
EC Y +FDF++ +SE + ++F ++W PDTA+
Sbjct: 62 ADECRYAIFDFDFV-----SSEGVPRSRIFFVAWSPDTAR 96
>At4g34970.1 68417.m04957 actin-depolymerizing factor, putative
similar to SP|Q9ZNT3 Actin-depolymerizing factor 5
(ADF-5) (AtADF5) {Arabidopsis thaliana}; contains Pfam
profile PF00241: Cofilin/tropomyosin-type actin-binding
protein
Length = 130
Score = 69.7 bits (163), Expect = 6e-13
Identities = 32/109 (29%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
Frame = +2
Query: 62 VSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGGTGECX 238
++D CK ++ E+K K HRYVV+ + ++ +++ V+ VG Y+ L + +C
Sbjct: 1 MTDDCKKSFMEMKWKKVHRYVVYKLEEKSRKVTVDKVGAAGESYDDLAASLPED---DCR 57
Query: 239 YGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSNSFDAL 385
Y +FDF+Y T + + K+F ++W P+ +++++KM+Y+ S L
Sbjct: 58 YAVFDFDYV-----TVDNCRMSKIFFITWSPEASRIREKMMYATSKSGL 101
>At3g45990.1 68416.m04976 actin-depolymerizing factor, putative
similar to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}; contains Pfam
profile PF00241: Cofilin/tropomyosin-type actin-binding
protein
Length = 133
Score = 62.9 bits (146), Expect = 7e-11
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Frame = +2
Query: 56 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETV------GERNAEYEQFLEDLQK 217
+ + D CK T+ E+K+ + R +V+ I D Q+ VE GER YE+F L
Sbjct: 1 MVLHDDCKLTFLELKERRTFRSIVYKIEDNMQVIVEKHHYKKMHGEREQSYEEFANSLP- 59
Query: 218 GGTGECXYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSNSFD 379
EC Y + D E+ ++K+ ++W P TAK++KKM+YS++ D
Sbjct: 60 --ADECRYAILDIEFV---------PGERKICFIAWSPSTAKMRKKMIYSSTKD 102
>At3g03290.1 68416.m00326 universal stress protein (USP) family
protein contains Pfam profile: PF00582 universal stress
protein family
Length = 274
Score = 31.5 bits (68), Expect = 0.20
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 161 ETVGERNAEYEQFLEDLQKGGTGE 232
ET G+ +EYE+F E+ ++GG GE
Sbjct: 45 ETDGDSTSEYEEFEEEKERGGEGE 68
>At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 373
Score = 27.9 bits (59), Expect = 2.5
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -2
Query: 315 RKSFCFLLASDVPWHWCVYSKSNRPYXHSPVPPFCRSSRNC 193
RK FC + VPWH + K ++ P+ R R+C
Sbjct: 274 RKHFC--INCKVPWHSNLSCKEHKSSGREPITTVWRQCRSC 312
>At4g08350.1 68417.m01380 KOW domain-containing transcription factor
family protein chromatin structural protein homolog
Supt5hp - Mus musculus,PID:g2754752
Length = 1029
Score = 26.6 bits (56), Expect = 5.7
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 283 VGG*QETEALPDVVVPGHRQGQEEDV 360
+GG E +PD++V H+ G++ DV
Sbjct: 916 IGGDAEAWFMPDILVDIHKAGEDTDV 941
>At1g44835.1 68414.m05136 YbaK/prolyl-tRNA synthetase family protein
contains Pfam PF04073: YbaK / prolyl-tRNA synthetases
associated domain; similar to 25.7 kDa protein
(GI:7271117) [Cicer arietinum]
Length = 307
Score = 26.6 bits (56), Expect = 5.7
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +2
Query: 101 KDKKHRYVVFYIRDEKQIDVETVGER 178
KDKKHRY + + ++D++ + +R
Sbjct: 51 KDKKHRYYIVSAMVDTKVDMKVLSQR 76
>At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger)
family protein similar to C-terminal zinc-finger
[Glycine max] GI:558543; contains Pfam profile: PF00097
zinc finger, C3HC4 type (RING finger)
Length = 486
Score = 25.8 bits (54), Expect = 9.9
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Frame = -3
Query: 335 CPGTTTSGRASVSC*PPTCP---GTGACIQSQTGHXCIPRYRPSADPR 201
C G + G +S+ P P G A ++G+ C PRY ++ R
Sbjct: 217 CNGNRSDGSSSLWSQAPAVPYMHGNIATGSIESGNVCFPRYHETSSSR 264
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,329,665
Number of Sequences: 28952
Number of extensions: 129465
Number of successful extensions: 457
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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