Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0229
         (720 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    23   1.9  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.5  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    23   3.3  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    22   5.8  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    22   5.8  

>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 639 AITWSSASTNAPR 677
           AI WS  STN PR
Sbjct: 255 AILWSCTSTNCPR 267


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 401 CLEGVKECKKFLMSLGRYGNTP 466
           C    K C    + L RYG+TP
Sbjct: 292 CSYATKYCHSLKIHLRRYGHTP 313


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 570 SKRKPLMKEKPSSPSIASRRSLT 638
           +KRK L+ E P SP+  S++S T
Sbjct: 208 AKRKQLVSEHPDSPN--SKKSAT 228


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 374 IAGGNNSLPCLEGVKECKK 430
           I G   +L C+EG+++C +
Sbjct: 42  IFGAIATLTCIEGLRDCPR 60


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 374 IAGGNNSLPCLEGVKECKK 430
           I G   +L C+EG+++C +
Sbjct: 38  IFGAIATLTCIEGLRDCPR 56


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,216
Number of Sequences: 336
Number of extensions: 3320
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)