Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0229
(720 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0544 - 9362615-9362674,9362783-9362857,9362934-9363144,936... 123 2e-28
07_01_1091 - 10015180-10015236,10015705-10015779,10015874-100161... 119 3e-27
05_04_0333 + 20333243-20333329,20335048-20335110,20335276-203353... 117 1e-26
05_03_0407 + 13582595-13582681,13583067-13583129,13583289-135833... 116 2e-26
01_01_1165 - 9267891-9268145,9268395-9268510,9268991-9269127,926... 89 3e-18
08_02_1342 - 26268552-26268783,26270213-26271137,26271680-26272907 30 1.6
11_02_0061 + 7904260-7904824,7904935-7905470,7906184-7906861 30 2.1
01_03_0233 + 14042548-14044950 30 2.1
03_01_0640 - 4683970-4684481,4685197-4685343,4685606-4686764,468... 29 2.8
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 29 4.9
04_03_0179 - 12304726-12304782,12305509-12305601,12305729-123058... 28 8.6
02_05_0595 - 30225747-30226589,30227248-30227386,30228734-30228849 28 8.6
>03_02_0544 -
9362615-9362674,9362783-9362857,9362934-9363144,
9363279-9363403,9363492-9363593,9363676-9363738,
9363817-9363897,9364248-9364359,9364454-9364626,
9364722-9364829,9364909-9364992,9365131-9365193,
9365652-9365738
Length = 447
Score = 123 bits (296), Expect = 2e-28
Identities = 68/227 (29%), Positives = 121/227 (53%), Gaps = 6/227 (2%)
Frame = +2
Query: 20 RKFNIDTTPKLLFSRGPLVELLISSNIARYAEFRCVTRVLTWLNDQLMPVPCSRADVFAT 199
+++N+D PK + + G LV +LI +++ +Y F+ V + N ++ VP + + +
Sbjct: 69 KEYNVDMVPKFMMANGALVRVLIHTSVTKYLNFKAVDGSFVYNNGKIHKVPATDVEALKS 128
Query: 200 EAVGIVEKRMLMKMLTSIVGYSEEE-MNNEFKDWNNKTLKEYLTHKGLTPNLIHYILYAI 376
+G+ EKR K + Y E++ ++E D + T +E ++ GL + + +I +A+
Sbjct: 129 NLMGLFEKRRARKFFIYVQDYEEDDPKSHEGLDLHKVTTREVISKYGLEDDTVDFIGHAL 188
Query: 377 A--GGNNSL--PCLEGVKECKKFLMSLGRY-GNTPFLWPMYGSGELPQCFCRLCAVFGGV 541
A +N L P ++ VK K + SL R+ G +P+++P+YG ELPQ F RL AV+GG
Sbjct: 189 ALHRDDNYLDEPAIDTVKRMKLYAESLARFQGGSPYIYPLYGLAELPQAFARLSAVYGGT 248
Query: 542 YCLNRPIDKVETKTVDEGKTVVTIDSKSKKLNCDHLVIGVHECPEEL 682
Y LN+ KVE DE + S+ + C +V P+++
Sbjct: 249 YMLNKAECKVE---FDENGKAYGVTSEGETAKCKKVVCDPSYLPDKV 292
>07_01_1091 -
10015180-10015236,10015705-10015779,10015874-10016149,
10016204-10016332,10017070-10017171,10017626-10017688,
10017776-10017856,10018218-10018314,10019064-10019236,
10019327-10019434,10019706-10019789,10019985-10020047,
10020483-10020569
Length = 464
Score = 119 bits (286), Expect = 3e-27
Identities = 70/223 (31%), Positives = 116/223 (52%), Gaps = 2/223 (0%)
Frame = +2
Query: 20 RKFNIDTTPKLLFSRGPLVELLISSNIARYAEFRCVTRVLTWLNDQLMPVPCSRADVFAT 199
R +N+D PK + + G LV +LI + + +Y F+ V + ++ VP + + +
Sbjct: 69 RDYNVDMIPKFMMANGTLVRVLIHTGVTKYLSFKAVDGSYVFNKGKIHKVPSTDMEALKS 128
Query: 200 EAVGIVEKRMLMKMLTSIVGYSEEEMN-NEFKDWNNKTLKEYLTHKGLTPNLIHYILYAI 376
+G+ EKR K + Y E + + ++ D N T KE ++ GL N I +I +A+
Sbjct: 129 PLMGLFEKRRAGKFFLFVQDYKENDPSTHKGYDLNKMTTKELISKYGLDDNTIDFIGHAV 188
Query: 377 AGGNNSLPCLEGVKECKKFLMSLGRY-GNTPFLWPMYGSGELPQCFCRLCAVFGGVYCLN 553
A E + + S+GR+ G +P+++P+YG GELPQ F RL AV+GG Y LN
Sbjct: 189 ALHKEDNYLTEPAIDTL-YAESVGRFQGGSPYIYPLYGLGELPQGFARLSAVYGGTYMLN 247
Query: 554 RPIDKVETKTVDEGKTVVTIDSKSKKLNCDHLVIGVHECPEEL 682
+P K+E DEGK V + S+ + C +V P+++
Sbjct: 248 KPECKIEFN--DEGK-VCGVTSEGETAKCKKVVCDPSYIPDKV 287
>05_04_0333 +
20333243-20333329,20335048-20335110,20335276-20335359,
20335720-20335827,20335969-20336141,20337135-20337246,
20337468-20337548,20337635-20337697,20337779-20337880,
20338070-20338194,20338317-20338527,20338625-20338699,
20338990-20339043
Length = 445
Score = 117 bits (281), Expect = 1e-26
Identities = 70/218 (32%), Positives = 114/218 (52%), Gaps = 10/218 (4%)
Frame = +2
Query: 20 RKFNIDTTPKLLFSRGPLVELLISSNIARYAEFRCVTRVLTWLNDQLMPVPCSRADVFAT 199
R +N+D PK + + G LV LI +++ +Y F+ V + ++ VP + + +
Sbjct: 69 RDYNVDMVPKFMMANGTLVRTLIHTDVTKYLSFKAVDGSYVFSKGKIHKVPATDMEALKS 128
Query: 200 EAVGIVEKRMLMKMLTSIVGYSEEE-MNNEFKDWNNKTLKEYLTHKGLTPNLIHYILYAI 376
+G+ EKR + Y E + ++ D T +E + GL+ + + +I +A+
Sbjct: 129 PLMGLFEKRRARNFFIYVQDYDEADPKTHQGLDLTTMTTRELIAKYGLSDDTVDFIGHAL 188
Query: 377 AGGNNSL----PCLEGVKECKKFLMSLGRY-GNTPFLWPMYGSGELPQCFCRLCAVFGGV 541
A + P ++ VK K + SL R+ G +P+++P+YG GELPQ F RL AV+GG
Sbjct: 189 ALHRDDRYLNEPAIDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPQGFARLSAVYGGT 248
Query: 542 YCLNRPIDKVETKTVDEGKTV-VTID---SKSKKLNCD 643
Y LN+P KVE EGK VT + +K KK+ CD
Sbjct: 249 YMLNKPDCKVEFDM--EGKVCGVTSEGETAKCKKVVCD 284
>05_03_0407 +
13582595-13582681,13583067-13583129,13583289-13583372,
13583757-13583864,13584018-13584190,13585190-13585301,
13585424-13585504,13585611-13585673,13585764-13585865,
13586063-13586187,13586316-13586526,13586614-13586688,
13586950-13587003
Length = 445
Score = 116 bits (279), Expect = 2e-26
Identities = 69/218 (31%), Positives = 115/218 (52%), Gaps = 10/218 (4%)
Frame = +2
Query: 20 RKFNIDTTPKLLFSRGPLVELLISSNIARYAEFRCVTRVLTWLNDQLMPVPCSRADVFAT 199
+ +N+D PK + + G LV LI +++ +Y F+ V + ++ VP + + +
Sbjct: 69 KDYNVDMVPKFMMANGTLVRTLIHTDVTKYLSFKAVDGSYVFSKGKIHKVPATDMEALKS 128
Query: 200 EAVGIVEKRMLMKMLTSIVGYSEEE-MNNEFKDWNNKTLKEYLTHKGLTPNLIHYILYAI 376
+G+ EKR + Y+E + ++ D T +E + GL+ + + +I +A+
Sbjct: 129 PLMGLFEKRRARNFFIYVQDYNEADPKTHQGLDLTTMTTRELIAKYGLSDDTVDFIGHAL 188
Query: 377 AGGNNSL----PCLEGVKECKKFLMSLGRY-GNTPFLWPMYGSGELPQCFCRLCAVFGGV 541
A + P ++ VK K + SL R+ G +P+++P+YG GELPQ F RL AV+GG
Sbjct: 189 ALHRDDRYLNEPAIDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPQGFARLSAVYGGT 248
Query: 542 YCLNRPIDKVETKTVDEGKTV-VTID---SKSKKLNCD 643
Y LN+P KVE EGK VT + +K KK+ CD
Sbjct: 249 YMLNKPDCKVEFDM--EGKVCGVTSEGETAKCKKVVCD 284
>01_01_1165 -
9267891-9268145,9268395-9268510,9268991-9269127,
9269645-9269808,9269892-9269972,9270783-9270962,
9271489-9271929,9273234-9273344,9274355-9274463,
9274618-9274643,9274823-9274903,9275013-9275211,
9275374-9275449,9275553-9275769,9276117-9276155,
9276684-9276783,9276962-9277084,9277171-9277895
Length = 1059
Score = 89.0 bits (211), Expect = 3e-18
Identities = 79/259 (30%), Positives = 119/259 (45%), Gaps = 30/259 (11%)
Frame = +2
Query: 20 RKFNIDTT-PKLLFSRGPLVELLISSNIARYAEFRCVT--RVLTWLNDQLMPVPCSRADV 190
R+F D P+LL+ V+LL+ S + + EF+ V +L W D L PVP SR +
Sbjct: 116 RRFTADLVGPRLLYCADEAVDLLLRSGGSHHVEFKSVEGGTLLYWDGD-LYPVPDSRQAI 174
Query: 191 FATEAVGIVEKRMLMKMLTSIVGY-----------SEEEMNNEFKDWN-NKTLKEYLTHK 334
F + + EK +L + + + E E + D + + E+L +
Sbjct: 175 FKDTTLQLREKNLLFRFFKLVQAHIAASAAGAAAAGEGEASGRLPDEDLDLPFVEFLKRQ 234
Query: 335 GLTPNLIHYILYAIA------GGNNS----LPCLEGVKECKKFLMSLGRYGNTP--FLWP 478
L+P + +LYAIA G S L EGVK + S+GR+ N F++P
Sbjct: 235 NLSPKMRAVVLYAIAMADYDQDGVESCERLLTTREGVKTIALYSSSIGRFANAEGAFIYP 294
Query: 479 MYGSGELPQCFCRLCAVFGGVYCLNRPIDKVETKTVDEGKTVVTID-SKSKKLNCDHLVI 655
MYG GELPQ FCR AV G +Y L P + +E K V I + + + C L++
Sbjct: 295 MYGHGELPQAFCRCAAVKGALYVLRMPATALLVD--EEKKRYVGIRLASGQDILCQQLIL 352
Query: 656 G-VHECPE-ELMSSEPAEN 706
+E P ++ S P N
Sbjct: 353 DPSYEIPSLDMPSDAPVSN 371
>08_02_1342 - 26268552-26268783,26270213-26271137,26271680-26272907
Length = 794
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 269 EEMNNEFKDWNNKTLKEYLTHKGLTPNLIHYILYAIAG 382
EE NE KDWN +K++ K L P L+ +++ ++ G
Sbjct: 659 EENQNEQKDWNKGGIKKHFISK-LPPVLVIHLMRSLLG 695
>11_02_0061 + 7904260-7904824,7904935-7905470,7906184-7906861
Length = 592
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -2
Query: 554 DSGSRRRRKLHRACR 510
D+GSRRRR+ HR CR
Sbjct: 424 DAGSRRRRRYHRICR 438
>01_03_0233 + 14042548-14044950
Length = 800
Score = 29.9 bits (64), Expect = 2.1
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = +2
Query: 221 KRMLMKMLTSIVGYSEEEMNNEFKDW 298
+RML+ ++ ++ ++E E++ EF DW
Sbjct: 185 RRMLLSLVPAVRAHAEREISREFSDW 210
>03_01_0640 -
4683970-4684481,4685197-4685343,4685606-4686764,
4686851-4686907
Length = 624
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 406 RRCQGMQEVPNEPRKIWQHSILMAHVWKRRIAAMLLQALCSFRRR 540
++C Q +P+ RK+W +L +H R AA + A+ S +R
Sbjct: 209 KKCSSSQVLPSRSRKLWWRLLLRSHRNLHRPAATVPAAVPSAEQR 253
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/49 (22%), Positives = 27/49 (55%)
Frame = +2
Query: 551 NRPIDKVETKTVDEGKTVVTIDSKSKKLNCDHLVIGVHECPEELMSSEP 697
+ P D V+ K ++ + T+D ++++ +C + + E E++ +EP
Sbjct: 1155 SEPTDDVQVKELEPEEISNTVDGETEEASCQTHEVEMTESSEQMKDTEP 1203
>04_03_0179 -
12304726-12304782,12305509-12305601,12305729-12305833,
12306715-12306793,12307297-12307415,12307728-12307919,
12308158-12308277,12309542-12309613,12310157-12310246,
12310402-12310485
Length = 336
Score = 27.9 bits (59), Expect = 8.6
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Frame = -3
Query: 223 FLDDTDRFGGEYVGSGARNRHQLIVE---PGQDAGHASELSVARDVRRDQKLDKGSAREQ 53
F+D+ D G ++ SG R Q IVE G + V R + LD R
Sbjct: 212 FIDEIDAIGSKHFDSGDREVQQTIVELLNQLDGVGSYESIKVIAATNRPEVLDPAFLRSG 271
Query: 52 QLWSCINVKFPILRCKI 2
+L I P + +I
Sbjct: 272 RLDQKIEFPHPSEQARI 288
>02_05_0595 - 30225747-30226589,30227248-30227386,30228734-30228849
Length = 365
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +3
Query: 489 AENCRNASAGSVQFSAASTA*IGPSIKSKRKPLMKEKPSSPSIA--SRRSLTAITWSSAS 662
A+N R ASA S + S+ + P+ + P PSS +IA + + T T +
Sbjct: 203 AKNQRRASASSPRSSSGGSGNTSPTAAAATTPTTPATPSSNTIAVINHATTTTTTTNPFP 262
Query: 663 TNAP 674
T+ P
Sbjct: 263 TDVP 266
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,134,263
Number of Sequences: 37544
Number of extensions: 421338
Number of successful extensions: 1529
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1522
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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