Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0229
         (720 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)                  211   4e-55
SB_30272| Best HMM Match : GDI (HMM E-Value=0)                        108   5e-24
SB_9517| Best HMM Match : GDI (HMM E-Value=1.8e-14)                    68   9e-12
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)                 31   0.94 
SB_27135| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_52194| Best HMM Match : RVT_1 (HMM E-Value=0.94)                    30   2.2  
SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)                   30   2.2  
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)                       29   2.9  
SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18)                     29   3.8  
SB_4269| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.0  
SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12)              28   8.8  
SB_33773| Best HMM Match : RVT_thumb (HMM E-Value=4)                   28   8.8  
SB_27384| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_17759| Best HMM Match : adh_short (HMM E-Value=1.5)                 28   8.8  
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 1024

 Score =  211 bits (516), Expect = 4e-55
 Identities = 94/195 (48%), Positives = 139/195 (71%)
 Frame = +2

Query: 2   DFAAEYRKFNIDTTPKLLFSRGPLVELLISSNIARYAEFRCVTRVLTWLNDQLMPVPCSR 181
           D    +R+FNID  PKLL SRG LVE LIS+NI+ YAEF+ V ++LT+L   +  VPCSR
Sbjct: 317 DLEPYHRQFNIDLAPKLLLSRGALVESLISANISHYAEFKAVNQILTFLEGSMEAVPCSR 376

Query: 182 ADVFATEAVGIVEKRMLMKMLTSIVGYSEEEMNNEFKDWNNKTLKEYLTHKGLTPNLIHY 361
           +DVF+++ + ++EKR+LMK LT  + ++E     E+K + +K   E+L  + +TPNL H+
Sbjct: 377 SDVFSSKLIPVIEKRLLMKFLTFCLDHNEHL--EEYKPFEDKPFVEFLKSRRMTPNLQHF 434

Query: 362 ILYAIAGGNNSLPCLEGVKECKKFLMSLGRYGNTPFLWPMYGSGELPQCFCRLCAVFGGV 541
           +++AIA        ++G+   + FLMSLGRYGN+PF+WP+YG GELPQ +CR+CAVFGG+
Sbjct: 435 VIHAIAMVKPDALTIDGLNAAQSFLMSLGRYGNSPFIWPLYGLGELPQAYCRMCAVFGGL 494

Query: 542 YCLNRPIDKVETKTV 586
           YCL++ I + + + V
Sbjct: 495 YCLHKSIKQAKEENV 509


>SB_30272| Best HMM Match : GDI (HMM E-Value=0)
          Length = 1199

 Score =  108 bits (259), Expect = 5e-24
 Identities = 63/202 (31%), Positives = 104/202 (51%), Gaps = 12/202 (5%)
 Frame = +2

Query: 2   DFAAEYRKFNIDTTPKLLFSRGPLVELLISSNIA-RYAEFRCVTRVLTWLNDQLMPVPCS 178
           D   + R +N+D  PK L + G LV++L+ + +A +Y  F+ +     +    +  VP +
Sbjct: 64  DSLGKPRDYNVDLIPKFLMADGTLVKILVHTGVATKYMNFKQIEGSFVYRGGSVHKVPAN 123

Query: 179 RADVFATEAVGIVEKRMLMKMLTSIVGYSEEEMNNEFKDW-------NNKTLKEYLTHKG 337
             +   +  +GI EKR     L   +G  E E  + +KD+          T+ +      
Sbjct: 124 EKEALNSSLMGIFEKRRFRNFLIFALGV-EPENASTWKDYAGGNFDPKKTTMNDVFKAYD 182

Query: 338 LTPNLIHYILYAIAGGNN----SLPCLEGVKECKKFLMSLGRYGNTPFLWPMYGSGELPQ 505
           L+ +   +  +AIA   +    S PC E +   K +  SL +YG +P+++P+YG GELPQ
Sbjct: 183 LSQDTADFTGHAIALYRDDEYMSKPCEEAIMRIKLYYQSLSKYGGSPYIYPVYGLGELPQ 242

Query: 506 CFCRLCAVFGGVYCLNRPIDKV 571
            F RLCAV+GG Y L++ ID+V
Sbjct: 243 GFARLCAVWGGTYMLDKAIDEV 264


>SB_9517| Best HMM Match : GDI (HMM E-Value=1.8e-14)
          Length = 175

 Score = 67.7 bits (158), Expect = 9e-12
 Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
 Frame = +2

Query: 335 GLTPNLIHYILYAIAGGNNSL----PCLEGVKECKKFLMSLGRYGNTPFLWPMYGSGELP 502
           GL  N   ++ +A+A   N      P  + V++ K +  SL RYG +P+L+P+YG GE+P
Sbjct: 9   GLDANTADFVGHAMALEINDSYKDQPFGQTVEKIKLYNESLSRYGKSPYLYPLYGLGEIP 68

Query: 503 QCFCRLCAVFGGVYCLNRPIDKV 571
           Q F RL A++GG Y L++PI+ +
Sbjct: 69  QGFARLSAIYGGTYMLDKPIEAI 91


>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
          Length = 4607

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
 Frame = +2

Query: 182  ADVFATEAVGIVEKRMLMKMLTSIVGYSEEEMNNEFK--DWNNKTLKEYLTHKGLTPNLI 355
            +DV   E   I+E+   +K  T  +   + E+++E++  D +N+   E     G   + +
Sbjct: 2571 SDVLCPEQASIIEE---LKKWTKNISNWDVEVSSEYQSQDESNEVFAECDMFAGFHEDTL 2627

Query: 356  HYILYAIAGGNNSLPCLEGVKECKKFLMSL 445
              ++  I+  NN LP  E V+ CK  LM +
Sbjct: 2628 PSLVLKISE-NNDLPREEIVRSCKNHLMDV 2656


>SB_27135| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 222

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
 Frame = +2

Query: 65  GPLVELLISSNIARYAEFRCVTRVLT-WLNDQLMPVPCSRADVFATEAVGIV 217
           GPL+ +++ + +A Y +FR V+ ++T W+   L+    +R  V   EA+G+V
Sbjct: 133 GPLLIVILYAILALYGQFRVVSWIITIWVLGSLIVFLLAR--VLGGEAIGVV 182


>SB_52194| Best HMM Match : RVT_1 (HMM E-Value=0.94)
          Length = 472

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -1

Query: 498 NSPLPYMGHKNGVLPYLPRLIRNFLHSLTPSR--QGKLLFPPAIAYR 364
           N  +P++   N  LPYLP ++RN    L  S   +G +   P +AYR
Sbjct: 365 NDRVPFVVTFNPALPYLPGILRNLQPVLESSSRCRGAIGRVPMVAYR 411


>SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)
          Length = 1284

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
 Frame = +2

Query: 488  SGELPQCFCRLCAVFGGVYCLN-RPIDKVETKTVDEGKTVVTIDSKSKKLNCDHLVIGVH 664
            +G+    FC++C+     +CL+  PID+ ++   D   T V    + K L CD    G H
Sbjct: 828  AGKDKMFFCKVCSEPFHGFCLDEEPIDE-DSWCCDSCSTCVVCGQQDKLLMCDKCQRGYH 886

Query: 665  -EC--PEELMSSEPAEN 706
             +C  P   + SE +E+
Sbjct: 887  VDCLGPSYPVVSEGSED 903


>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 382

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = -3

Query: 634 KLLRLAIDGDD-GFSFINGFRFDFIDGPIQAVDAAENCTEPAEALRQFSASIHGP*EWSV 458
           K++R +  G+  GF+FIN   FD  D  I+A++    C  P      F     G    S 
Sbjct: 131 KIMRDSDTGNSKGFAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKESKGERHGSA 190

Query: 457 A 455
           A
Sbjct: 191 A 191


>SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18)
          Length = 458

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +2

Query: 488 SGELPQCFCRLCAVFGGVYCLN-RPIDKVETKTVDEGKTVVTIDSKSKKLNCDHLVIGVH 664
           +G+    FC++C+     +CL+  PID+ ++   D   T V    + K L CD    G H
Sbjct: 169 AGKDKMFFCKVCSEPFHGFCLDEEPIDE-DSWCCDSCSTCVVCGQQDKLLMCDKCQRGYH 227


>SB_4269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 160

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = +2

Query: 203 AVGIVEKRMLMKMLTSIVGYSEEEMNNEFKDWNNKTLKEYLTHKGLTPNLIHYILYAIAG 382
           +VG      LM   TS+ G S + +++EF++ ++K  ++   H  L     H + Y  + 
Sbjct: 17  SVGAAMSINLMAEFTSL-GQSHDPVDDEFREQHDKVYEDDSKHHRLKHIFRHNVRYIRSM 75

Query: 383 GNNSLP 400
              SLP
Sbjct: 76  NRRSLP 81


>SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12)
          Length = 695

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = -3

Query: 643 IAVKLLRLAIDGDDGFSFINGFRFDFIDGPIQAVDAAENCTEPAEALRQFSASI 482
           IA  +L +     DG+ F N   + F  GP     A + CTE   +L     SI
Sbjct: 135 IASNVLPVTAKCSDGYKFNNYKCYKFFPGPRAWESAVQRCTEQFASLVTIENSI 188


>SB_33773| Best HMM Match : RVT_thumb (HMM E-Value=4)
          Length = 282

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 302 NKTLKEYLTHKGLTPNLIHYILYAIAGGNNSLPCLEGVKECKKFLMSLG 448
           ++ LK  L H     N+IH +       ++ L CLE      KF +S+G
Sbjct: 82  SEALKWVLKHNYNVRNVIHILDDFFVAESSKLGCLESFTRLLKFFISVG 130


>SB_27384| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1032

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 269  EEMNNEFKDWNNKTLKEYLTHKGLTPNLIHYILYAIAGG 385
            EE   E  +WN   +  +L  KG+  N+  Y + A++ G
Sbjct: 902  EEAMIEAAEWNRVEVARWLVDKGVGDNVSGYTIAAVSNG 940


>SB_17759| Best HMM Match : adh_short (HMM E-Value=1.5)
          Length = 779

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 572 ETKTVDEGKTVVTIDSKSKKLNCDHLVIGVHECPEELMSSEPAEN 706
           +T  +  G  +VT    + ++N DHL + +  C E L S   A++
Sbjct: 597 DTSDLSLGGAMVTTAKTASEINADHLHLLIGICMESLCSPRAAQS 641


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 548  LNRPIDKVETKTVDEGKTV--VTIDSKSKKLNCDHLVIGVHECPEELMSSEP 697
            L  P+D V  KT D    +  V +  +  +++CD  +  +H+   ++ S EP
Sbjct: 2763 LTAPMDVVARKTADRQTKLQGVLLQCQELQISCDDFMDKLHDFETQVTSQEP 2814


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,481,991
Number of Sequences: 59808
Number of extensions: 463875
Number of successful extensions: 1418
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1416
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)