Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0228
         (751 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    26   0.37 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   1.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.4  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   3.4  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   3.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   6.0  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           21   8.0  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   8.0  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    21   8.0  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +3

Query: 132 GARVVPGAAREPRHRPAH 185
           G R  PG AR  RH PAH
Sbjct: 327 GGRRGPGPARSRRHLPAH 344


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 230 CGISRPTTWRPCNTGTSDPRSWWEVTARCTRAPAGCTSAR 349
           C   +PT WR C+  T + + +    +   R  +G T+AR
Sbjct: 878 CENGKPTCWRECDKATCE-KLFRMKKSSALRPASGGTTAR 916


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +3

Query: 9    APRHGPPPLGSCTRARSQLASHRNSSRLRRRQ*KAMGRFDPGARVVPGA 155
            A  +GP   G  TRA   LA +    R+++R        DP  R+ P A
Sbjct: 2582 AKSYGPGEAGEFTRAGGFLAYYEICERVKKRGWTVTR--DPQGRIGPYA 2628


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +1

Query: 403 NTDDPSGAMLEALRSLLRCGVERGHLAGDYR 495
           N D   GA    LR L  CG+ R    G  R
Sbjct: 398 NADQTPGAYWIQLRGLGECGIRRVQQLGILR 428


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +1

Query: 403 NTDDPSGAMLEALRSLLRCGVERGHLAGDYR 495
           N D   GA    LR L  CG+ R    G  R
Sbjct: 398 NADQTPGAYWIQLRGLGECGIRRVQQLGILR 428


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -3

Query: 122  PSHCFLLTTSQSAAISVRSELRASASTTAEWRRAMSRSG 6
            P HC        A I+V++ + ++ S  A W+  +  +G
Sbjct: 1191 PIHCQTEQDVPEAPIAVKALVMSTDSILASWKPPVEPNG 1229


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 223 ELVRNIQTNHMEALQYWD 276
           EL +  +TN M+ +Q+W+
Sbjct: 230 ELPQQHKTNVMDVMQWWE 247


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 503 ATTR*SPARWPRSTPQRSSDRSASSIAPLGSSVLKLP 393
           ATT  +PA +  S+P  SS + +SS A    +    P
Sbjct: 27  ATTE-APAAYSSSSPSGSSPQHSSSSASTSPAARMYP 62


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 503 ATTR*SPARWPRSTPQRSSDRSASSIAPLGSSVLKLP 393
           ATT  +PA +  S+P  SS + +SS A    +    P
Sbjct: 27  ATTE-APAAYSSSSPSGSSPQHSSSSASTSPAARMYP 62


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,438
Number of Sequences: 336
Number of extensions: 3723
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)