Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0228
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    30   0.31 
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    29   0.71 
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    29   0.94 
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch...    28   1.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.9  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    27   3.8  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      26   5.0  
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    25   8.7  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
 Frame = -3

Query: 488 SPARWPRSTPQRSS--DRSASSIAPLGSSVLKLPMNATPMDLELYP*VCAPTCSQPEPSY 315
           S  R P S P R S    S +S  P+ S    +P +  P      P V +P  +   PS 
Sbjct: 135 SELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAP-VKSPPSAPSLPSA 193

Query: 314 TLPLPPTRNEGPMSQ 270
             P+PP     P+SQ
Sbjct: 194 VPPMPPKVPPPPLSQ 208


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -3

Query: 461 PQRSSDRSASSIAPLGSSVLKLPMNATPMDLELYP*VCAPTCSQPEPSYTLPL 303
           P+ S+++   S++ L SS    P +AT     LYP   APT   P  S + PL
Sbjct: 219 PRESTEKPLLSVSALSSSSHLQPTSATSSSSRLYPSRPAPT--PPASSSSSPL 269


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
 Frame = -3

Query: 512 CRCATTR*SPARWPRSTPQR-------SSDRSASSIAPLGSSVLKLPM-NATPMDLELYP 357
           CR ATT   P      T Q        S+ R A++     + + ++P  N  P D +   
Sbjct: 532 CRLATTHVEPTEVTAFTTQSVLASSAPSAGRPAAAQISRPAQLFRIPSTNPPPFDGD--- 588

Query: 356 *VCAPTCSQPEPSY 315
            VC P C+ P P+Y
Sbjct: 589 -VCPPACNTPPPNY 601


>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 311

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/37 (35%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = -2

Query: 624 YAVIMLRVLDGVHVLQPLRPASYLV-VELPAGALRGN 517
           YAV +L +LD +HV+   + ASY++ ++   G+++G+
Sbjct: 86  YAVQVLAMLDSLHVVDKDKVASYIIGLQNEDGSMKGD 122


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
 Frame = +2

Query: 245 PTTWRPCNTGTSDPRSWWEVT-ARCTRAPAGCTSARTP--------TGTTRGPSESHSSA 397
           PTT   C T TS P +    T    T  P   +S  TP        TGT+  P  S S++
Sbjct: 279 PTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTS 338

Query: 398 TSTRT 412
            +T T
Sbjct: 339 CTTST 343


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 610 HYHSVSHSAVLGVFRSWT 663
           H H+  H+ V+GV ++WT
Sbjct: 574 HMHADHHAGVIGVLKAWT 591


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -3

Query: 296 TRNEGPMSQYCKASMWLVWIFRTSSSQPAS 207
           T+   P   Y     WLVW     +S PAS
Sbjct: 447 TQGSAPPWHYIPCQSWLVWYPSEDASNPAS 476


>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +1

Query: 454 RCGVERGHLAGDYRVVAHRQLIASESPGRKLYNQIRRW 567
           + GV+  +L GD  ++AH+Q   +    R   + +  W
Sbjct: 168 KLGVQLSYLDGDAGIIAHKQTQETHERIRNWLSSLNSW 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,844,687
Number of Sequences: 5004
Number of extensions: 59344
Number of successful extensions: 181
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)