Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0228
(751 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1074 + 30168065-30168577 35 0.079
07_03_0446 - 18285132-18285221,18285437-18285499,18285805-182858... 33 0.18
10_07_0039 - 12269928-12270103,12270871-12271015,12271066-122710... 33 0.24
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623... 32 0.42
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 31 0.98
07_03_1387 + 26202975-26203274,26203363-26203449,26203541-262036... 31 1.3
03_05_0333 + 23245139-23245224,23245527-23245633,23246372-23247282 31 1.3
01_06_0789 - 32010131-32010330,32010438-32010866,32011658-320117... 30 1.7
04_04_0368 + 24741755-24741970,24742415-24742811,24742892-247431... 30 2.3
09_03_0040 + 11816056-11819069,11819837-11820428 29 3.9
05_03_0014 - 7372231-7372984,7373065-7373120,7375012-7375335 29 3.9
02_02_0474 + 10738476-10738797,10739568-10739677,10739891-107400... 29 3.9
02_02_0403 - 9866122-9867231 29 3.9
03_01_0381 - 2960533-2960805 29 5.2
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948... 29 5.2
04_04_0977 + 29851086-29851463,29852054-29852551,29853665-298537... 28 6.9
03_06_0614 - 35099225-35099461,35099545-35099694,35099919-351000... 28 6.9
02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178 28 6.9
02_01_0384 - 2781362-2782299,2782320-2782428 28 6.9
12_02_0674 - 21745321-21746223,21746229-21747608 28 9.1
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 28 9.1
06_03_1310 + 29238644-29240260 28 9.1
06_03_0179 - 17604561-17606435 28 9.1
05_07_0095 - 27659944-27660795,27660900-27661172,27661280-276613... 28 9.1
05_05_0055 + 21977546-21978061,21978144-21978162,21978168-219784... 28 9.1
01_07_0382 + 43188478-43190919 28 9.1
>03_05_1074 + 30168065-30168577
Length = 170
Score = 34.7 bits (76), Expect = 0.079
Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = -2
Query: 468 LHAAAQQRPQRLQHRAARIVRVEVADECDSDGPRVVP--VGVRADVQPAGALVHLAVTSH 295
L AA ++RP + + AA VR A D DGP V P AD + AG + T
Sbjct: 95 LPAAMRRRPLQAEEMAALAVRASAALVGDHDGPLVFPEAAASAADPRAAGKGCRRSRTRR 154
Query: 294 QERGSD-VPVL 265
RG D VP L
Sbjct: 155 HSRGRDFVPDL 165
>07_03_0446 -
18285132-18285221,18285437-18285499,18285805-18285867,
18286079-18286129,18286413-18286506,18286696-18286856,
18287089-18287145,18287380-18287493,18287934-18287999,
18288063-18288266,18289207-18289284,18289669-18289788,
18290425-18290491,18290635-18290735,18290820-18290936,
18292024-18292107,18292181-18292309,18292385-18292510,
18292622-18292696,18292814-18292947,18293032-18293137,
18293220-18293276,18294387-18294573,18295244-18295407,
18296129-18296353,18296538-18296744,18297043-18297375,
18297604-18297993
Length = 1220
Score = 33.5 bits (73), Expect = 0.18
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -1
Query: 253 CGWSGYSAPAPRSQRPSCR 197
CG+ GYS PAP++ RPSCR
Sbjct: 63 CGY-GYSTPAPKAPRPSCR 80
>10_07_0039 -
12269928-12270103,12270871-12271015,12271066-12271094,
12271394-12271478
Length = 144
Score = 33.1 bits (72), Expect = 0.24
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 126 DPGARVVPGAAREPRHRPAHSHTL 197
D G R VPG + PRHRP H T+
Sbjct: 81 DGGRRAVPGQSTVPRHRPRHDPTI 104
>08_01_0706 -
6235817-6235988,6236028-6236338,6236421-6236627,
6236718-6236889,6236994-6237249,6238015-6238073,
6238693-6238782,6238869-6239013,6239598-6239712,
6240690-6240701
Length = 512
Score = 32.3 bits (70), Expect = 0.42
Identities = 28/127 (22%), Positives = 57/127 (44%), Gaps = 7/127 (5%)
Frame = +1
Query: 211 AGCEELVRNIQTNHMEALQYWDIGPSFL---VGGNGKVYEGSGWLHVGAHTYGYNSRSIG 381
AG + ++ + E++ + G SF+ +GG G+++ G W + Y S S
Sbjct: 365 AGVRTITGSVTAHARESVDD-NTGYSFVNCSIGGTGRIWLGRAWRPYSTVVFAYTSMSDI 423
Query: 382 VAFIGNFNTDDPS----GAMLEALRSLLRCGVERGHLAGDYRVVAHRQLIASESPGRKLY 549
+A G + +DPS + L ++ S++ C +R G+YR ++ P +
Sbjct: 424 IASEGWNDWNDPSRDQYASSLYSV-SIVTCMTKRTVFYGEYRCTGDGANLSDRVPYAQKL 482
Query: 550 NQIRRWP 570
+ ++ P
Sbjct: 483 SDVQVLP 489
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 31.1 bits (67), Expect = 0.98
Identities = 24/78 (30%), Positives = 35/78 (44%)
Frame = -3
Query: 488 SPARWPRSTPQRSSDRSASSIAPLGSSVLKLPMNATPMDLELYP*VCAPTCSQPEPSYTL 309
SP+ P S+ + S + S +P S + N +P P +P+ SQP PSY+
Sbjct: 1743 SPSYNP-SSAKYSPSHAYSPSSPRLSPYSQTSPNYSPTSPTYSP--TSPSYSQPSPSYSP 1799
Query: 308 PLPPTRNEGPMSQYCKAS 255
P T + GP Y S
Sbjct: 1800 TSPYTTSGGPSPDYSPTS 1817
>07_03_1387 +
26202975-26203274,26203363-26203449,26203541-26203648,
26203708-26203980,26205242-26205355,26205900-26206268
Length = 416
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
Frame = +2
Query: 221 RSWCGISRPTTWRPCNTGTSD-----PRSWWEVTARCTRAPAGCTSARTPTGTTRGPSES 385
R W SR + R C+ + P WW AR RAP A PS S
Sbjct: 20 RPWTAASRGVSARRCSVAPAQVRARGPTEWWPAAARRRRAPRRHAVAAKAGAADARPSSS 79
Query: 386 HSSATSTRTI 415
+ + + +I
Sbjct: 80 SDAVSYSSSI 89
>03_05_0333 + 23245139-23245224,23245527-23245633,23246372-23247282
Length = 367
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +2
Query: 272 GTSDPRSWWEVTA--RCTRAPAGCTSARTPTGTTRGPSESHSSATST 406
GTS P + TA RCT + A CT+A +G G + S ++A T
Sbjct: 65 GTSPPGAPTAATAPARCTTSSARCTAAAAASGPGGGSARSAAAAAPT 111
>01_06_0789 -
32010131-32010330,32010438-32010866,32011658-32011752,
32011836-32011933,32012586-32012942,32013615-32013792,
32013856-32013936,32014441-32014548,32014916-32015178
Length = 602
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -2
Query: 372 PRVVPVGVRADVQPAGALVHLAVTSHQE-RGSDVPVLQGLHVVGLDIPHQLLAASV 208
PR VPVG QP HL V Q+ +PV++ HVV + +P +A +V
Sbjct: 14 PRAVPVGFP---QPQQLRAHLPVGVPQQLHPRGLPVMRSHHVVHVPLPRPAVAVAV 66
>04_04_0368 +
24741755-24741970,24742415-24742811,24742892-24743187,
24743860-24744096
Length = 381
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Frame = +3
Query: 129 PGARVVPGAAREPRHRPAHSHTL-----LQDGRWLRGAGAEYPDQPHGGLAILGHRTLVP 293
P + P A P HR HSH + G G P++ HG LA++ L+P
Sbjct: 178 PEGNLPPSDATLPMHRSMHSHAFNYTSGMASSSGGSGGGGFPPERKHGLLAMMAWGVLMP 237
>09_03_0040 + 11816056-11819069,11819837-11820428
Length = 1201
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = -3
Query: 455 RSSDRSASSIAPLGSSVLKLPMNATPMDL 369
R R+AS++A G+S+ +LP+ ATP+ +
Sbjct: 301 RDCGRAASTLAESGASMEELPLEATPISV 329
>05_03_0014 - 7372231-7372984,7373065-7373120,7375012-7375335
Length = 377
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = -2
Query: 156 PRQVRHVHRDQTVPLLFTDDVAIGCYFCEKRAESERE 46
P+ VR V R +TVP+ +TD A G EK E E E
Sbjct: 120 PKFVR-VLRPKTVPIRYTDTFASGTVALEKELEKEFE 155
>02_02_0474 +
10738476-10738797,10739568-10739677,10739891-10740094,
10740400-10740576,10740659-10740811,10741535-10741624,
10741939-10742049,10742169-10742285,10742881-10743032,
10743116-10743200,10743597-10743691,10744211-10744376,
10744459-10744654,10745662-10745795
Length = 703
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/72 (29%), Positives = 32/72 (44%)
Frame = -3
Query: 230 TSSSQPASVLQKGVTVCWTMTRLTGRARYDTCTGIKPSHCFLLTTSQSAAISVRSELRAS 51
TS+S A++ + T RL + + +PS ++ +S S RS LRAS
Sbjct: 35 TSASASAAMQMQAATTTTAARRLAPKPQ-PQANRCRPSSVSVVAAGRSRRRSARSSLRAS 93
Query: 50 ASTTAEWRRAMS 15
AS E + S
Sbjct: 94 ASLDQEVKERAS 105
>02_02_0403 - 9866122-9867231
Length = 369
Score = 29.1 bits (62), Expect = 3.9
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +3
Query: 12 PRHGPPPLGSCTRARSQLASHRNSSRLRRRQ*KAMGR-FDPGARVVPGAAREPRHRPAHS 188
P+H PL R+ S + R RRRQ +AM R F G +V G R A +
Sbjct: 297 PQHPVVPLSDDDRSDSPELPPESVPRRRRRQWRAMPRDFSHGRALVHGGHNNQRRGGAGA 356
Query: 189 -HTLLQDGRWLR 221
H+ RW R
Sbjct: 357 VHSPSSRYRWSR 368
>03_01_0381 - 2960533-2960805
Length = 90
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 147 VRHVHRDQTVPLLFTDDVAIGCYFCEKRAESERE 46
+R R +TVP+ +TD A G EK E E E
Sbjct: 1 MRRSQRPKTVPIRYTDTFASGTIALEKELEKEFE 34
>01_03_0303 +
14792842-14792949,14793659-14793760,14794657-14794800,
14794906-14794986,14795078-14795147,14795267-14795337,
14795427-14795594,14796030-14796074,14796449-14796511,
14796594-14796869,14797858-14797971,14798099-14798225,
14798315-14798484,14798743-14798841,14799577-14799630,
14801487-14801522,14801741-14801844,14801952-14802186,
14802377-14802609,14802846-14803346,14803422-14803716,
14805796-14805881,14806952-14807064,14807303-14807385,
14808014-14808866,14809215-14809364,14809963-14811146
Length = 1854
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 281 PMSQYCKASMWLVWIFRTSSSQPASV-LQKGVTVCWTMTRLTGRAR 147
P+ +YC +W +WI ++ QP V Q+ + W+ GRA+
Sbjct: 816 PLVKYCPPELWRMWI--SNLLQPLFVHCQQALDFSWSSLLREGRAK 859
>04_04_0977 +
29851086-29851463,29852054-29852551,29853665-29853754,
29854369-29854491
Length = 362
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/51 (39%), Positives = 24/51 (47%)
Frame = -2
Query: 567 PASYLVVELPAGALRGNELSVRHDAVVPREVAALHAAAQQRPQRLQHRAAR 415
PAS+L AG G E V+ A EV L AQQ +R + R AR
Sbjct: 32 PASFLFGNNNAGGAAGTETRVQVAAGAVPEVDQLLKQAQQPGRRKRRRRAR 82
>03_06_0614 -
35099225-35099461,35099545-35099694,35099919-35100066,
35100152-35100231,35100428-35100594,35100692-35100940,
35101025-35102310,35102423-35102544,35102946-35103272
Length = 921
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/49 (40%), Positives = 25/49 (51%)
Frame = -3
Query: 305 LPPTRNEGPMSQYCKASMWLVWIFRTSSSQPASVLQKGVTVCWTMTRLT 159
LP T + G S K S + R SSS +S +QK V+VC T T T
Sbjct: 381 LPRTGHSGRSSGGSKRSFGAKGLIRRSSSF-SSDIQKDVSVCTTTTEQT 428
>02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178
Length = 1143
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 24 PPPLGSCTRARSQLASHRNSS 86
PP LGSC+R R A H N S
Sbjct: 221 PPELGSCSRLRVLKAGHNNLS 241
>02_01_0384 - 2781362-2782299,2782320-2782428
Length = 348
Score = 28.3 bits (60), Expect = 6.9
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +3
Query: 12 PRHGPPPLGSCTRARSQLASHRNSSRLRRRQ*KAMGRFDPGARVVPGAAREPRHRPAHSH 191
P PLG CT A LA+ +S+ + A G G+ +P A PR P +
Sbjct: 143 PSSTSAPLGPCTLAHEGLAAVLATSKAASKSEAASG----GSSAIPPPATAPRFPPPRAM 198
Query: 192 T 194
T
Sbjct: 199 T 199
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 27.9 bits (59), Expect = 9.1
Identities = 41/162 (25%), Positives = 62/162 (38%), Gaps = 3/162 (1%)
Frame = -3
Query: 518 MSCRCATTR*SPARWPRSTPQRSSDRSASSIAPLGSSVLKLPMNATPMDLELYP*VCAPT 339
+S T +P+ P ST S S S +PL SS +K+P A +L PT
Sbjct: 581 LSTATGKTSSTPSTSPLST-STSKTSSTPSTSPLSSSTIKIPTTARTGELS------TPT 633
Query: 338 CSQPEPSYTLPLPPTRNEGPMSQ-YCKASMWLVWIFRTSSSQPASVLQKGVTVCWTMTRL 162
P + L ++ P + + S I TS + S G+ ++L
Sbjct: 634 DKIPTTTRAGDLSTATSKIPTAPGTSELSTTTSKISSTSCAGQFSTSTYGIPTTTCTSKL 693
Query: 161 TGRARYDTCTGIKPSHC--FLLTTSQSAAISVRSELRASAST 42
T +C P+ F +TS S ++L AS ST
Sbjct: 694 TA----SSCKVSSPTGACKFSTSTSTFTPTSFSNDLTASTST 731
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 27.9 bits (59), Expect = 9.1
Identities = 22/70 (31%), Positives = 27/70 (38%)
Frame = -3
Query: 488 SPARWPRSTPQRSSDRSASSIAPLGSSVLKLPMNATPMDLELYP*VCAPTCSQPEPSYTL 309
SP S P+ + S I P + P TPM +YP T S PE +
Sbjct: 515 SPPEIVPSPPEITPYPSPPEIVPSPPEIAPSPPIVTPMPPIIYPSPPEVTPSPPEIT-PY 573
Query: 308 PLPPTRNEGP 279
P PP GP
Sbjct: 574 PSPPEVTPGP 583
>06_03_1310 + 29238644-29240260
Length = 538
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 344 PTCSQPEPSYTLPLPPTRNEGPMS 273
P S P PS+ P PPT +E P S
Sbjct: 399 PPPSSPTPSHLPPPPPTYSESPKS 422
>06_03_0179 - 17604561-17606435
Length = 624
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = -2
Query: 570 RPASYLVVELPAGALRGNELSVRHDAVVPREVAALHAAAQQRPQRLQHRAARIVRVEVA 394
RP L V P+GA + L + P L AA RP + +A + +++VA
Sbjct: 87 RPGEILAVVGPSGAGKSTLLDILAARTAPTHGRLLLNAAPLRPSSFRRLSAHVPQMDVA 145
>05_07_0095 -
27659944-27660795,27660900-27661172,27661280-27661354,
27661683-27661837,27661935-27662051,27662148-27662487
Length = 603
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 479 RWPRSTPQRSSDRSASSIAPLGSSVLKLPMNATPMDLELYP 357
RW RST SS A S++ ++ L +PMD E+ P
Sbjct: 16 RWRRSTSSSSSSPLALSLSSSSAAALSDDDPGSPMDPEMPP 56
>05_05_0055 +
21977546-21978061,21978144-21978162,21978168-21978486,
21978779-21978799,21980780-21980857,21981116-21981359
Length = 398
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +2
Query: 521 PLRAPAGSSTTRYDAGLSGWRTWTP-SRTRNI-ITAYRIAPFL-VCSD 655
P+RA AGSS T G WR +R I + RIA FL CS+
Sbjct: 94 PIRARAGSSETSSPRGRENWRVQEALARVAEIQVLKVRIASFLDDCSE 141
>01_07_0382 + 43188478-43190919
Length = 813
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 304 NGKVYEGSGWLHVGAHTYGYNSR 372
+G V EG W HV H YG R
Sbjct: 555 SGLVIEGKHWFHVMGHGYGLTPR 577
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,397,828
Number of Sequences: 37544
Number of extensions: 524276
Number of successful extensions: 2432
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 2280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2429
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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