Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0228
(751 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08) 32 0.43
SB_56579| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.57
SB_27311| Best HMM Match : DEAD (HMM E-Value=0.17) 30 1.7
SB_44949| Best HMM Match : LIM (HMM E-Value=0.44) 30 2.3
SB_32075| Best HMM Match : LIM (HMM E-Value=0.44) 30 2.3
SB_22062| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_42624| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_57874| Best HMM Match : LIM (HMM E-Value=0.44) 29 4.0
SB_10740| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_5396| Best HMM Match : DEAD (HMM E-Value=0.73) 29 4.0
SB_366| Best HMM Match : ResIII (HMM E-Value=0.28) 29 4.0
SB_59553| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_13172| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_5403| Best HMM Match : TSP_1 (HMM E-Value=0) 29 4.0
SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_147| Best HMM Match : LepA_C (HMM E-Value=0.73) 29 5.3
SB_32130| Best HMM Match : TSP_1 (HMM E-Value=0) 29 5.3
SB_29289| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30) 28 7.0
SB_14541| Best HMM Match : ResIII (HMM E-Value=0.66) 28 7.0
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84) 28 7.0
SB_4087| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_32544| Best HMM Match : Extensin_2 (HMM E-Value=0.0062) 28 7.0
SB_12717| Best HMM Match : CheR (HMM E-Value=5.6) 28 7.0
SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15) 28 9.3
SB_31820| Best HMM Match : CG-1 (HMM E-Value=2.4) 28 9.3
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_24295| Best HMM Match : DUF1070 (HMM E-Value=3.9) 28 9.3
SB_18029| Best HMM Match : LIM (HMM E-Value=0.44) 28 9.3
SB_16849| Best HMM Match : RmlD_sub_bind (HMM E-Value=3.3) 28 9.3
>SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08)
Length = 1052
Score = 32.3 bits (70), Expect = 0.43
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = -3
Query: 461 PQRSSDRSASSIAPLGSSVLKLPMNATPMDLELYP*VCAPTCSQPEPSYTLPLPPTRNEG 282
P + +S+++ PL ++ LP N P+ YP PT P P+ PLP R
Sbjct: 607 PYATRLKSSTNRYPLPTNRYPLPTNRYPLPTNRYP---LPTNRYPIPTNRYPLPKNRYPP 663
Query: 281 PMSQ 270
P Q
Sbjct: 664 PYKQ 667
>SB_56579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1042
Score = 31.9 bits (69), Expect = 0.57
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Frame = -2
Query: 696 ILRVNT--I*IDTCPRSEHTKNGAMRYAVIMLRVLDGVHVLQPLRPASYLVVELPAGALR 523
+LRV T I P + +G +AV M R + V V P ++ P A
Sbjct: 651 VLRVCTDAIYAKAVPSAGQGGSGKTEWAVSMFRGRNVV-VFTPENDLAHDHQNNPRLACA 709
Query: 522 GNELSVRHDAVVPREVAALHAAAQQRPQRLQHRAARIVRVEVADEC 385
G + + H +P E + RP L H+ R+ V + DEC
Sbjct: 710 GRDQTYHHSLCIPAE----KPVEEWRPSELGHKLDRLAEVLIIDEC 751
>SB_27311| Best HMM Match : DEAD (HMM E-Value=0.17)
Length = 1178
Score = 30.3 bits (65), Expect = 1.7
Identities = 24/85 (28%), Positives = 35/85 (41%)
Frame = -2
Query: 639 NGAMRYAVIMLRVLDGVHVLQPLRPASYLVVELPAGALRGNELSVRHDAVVPREVAALHA 460
+G +AV M R + V VL P ++ P A G + H +P E
Sbjct: 722 SGKTEWAVSMFRGRNAV-VLTPENDLAHDHRNNPRLACAGRAQTYHHYLCIPAE----KP 776
Query: 459 AAQQRPQRLQHRAARIVRVEVADEC 385
+ RP L H+ R+ V + DEC
Sbjct: 777 IEEWRPSELGHKLDRLAEVIIIDEC 801
>SB_44949| Best HMM Match : LIM (HMM E-Value=0.44)
Length = 595
Score = 29.9 bits (64), Expect = 2.3
Identities = 24/86 (27%), Positives = 36/86 (41%)
Frame = -2
Query: 642 KNGAMRYAVIMLRVLDGVHVLQPLRPASYLVVELPAGALRGNELSVRHDAVVPREVAALH 463
++G +AV M R + V VL P ++ P A G + H +P E
Sbjct: 164 RSGKTEWAVSMFRGRNVV-VLTPENDLAHDHRNNPRLACAGRAQTYHHYLCIPAE----K 218
Query: 462 AAAQQRPQRLQHRAARIVRVEVADEC 385
+ RP L H+ R+ V + DEC
Sbjct: 219 PIEEWRPSELGHKLDRLAEVIIIDEC 244
>SB_32075| Best HMM Match : LIM (HMM E-Value=0.44)
Length = 789
Score = 29.9 bits (64), Expect = 2.3
Identities = 24/86 (27%), Positives = 36/86 (41%)
Frame = -2
Query: 642 KNGAMRYAVIMLRVLDGVHVLQPLRPASYLVVELPAGALRGNELSVRHDAVVPREVAALH 463
++G +AV M R + V VL P ++ P A G + H +P E
Sbjct: 341 RSGKTEWAVSMFRGRNVV-VLTPENDLAHDHRNNPRLACAGRAQTYHHYLCIPAE----K 395
Query: 462 AAAQQRPQRLQHRAARIVRVEVADEC 385
+ RP L H+ R+ V + DEC
Sbjct: 396 PIEEWRPSELGHKLDRLAEVIIIDEC 421
>SB_22062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = -2
Query: 579 QPLRPASYLVVELPAGALRGNELSVRHDAVVPREVAALHAAAQQRPQRLQHRAARIVRVE 400
+PLR +Y + ELP S +A +P V +A + + L R++R+ RV
Sbjct: 77 EPLRWGAYPMTELPLNKPEPARPSYTSNACLPSMVTTTNAQSNTAAKPLAARSSRVRRVR 136
Query: 399 VA 394
A
Sbjct: 137 TA 138
>SB_42624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 29.5 bits (63), Expect = 3.0
Identities = 24/85 (28%), Positives = 35/85 (41%)
Frame = -2
Query: 639 NGAMRYAVIMLRVLDGVHVLQPLRPASYLVVELPAGALRGNELSVRHDAVVPREVAALHA 460
+G +AV M R D V +L P ++ P A G + H +P E
Sbjct: 9 SGKTEWAVSMFRGRDVV-LLTPENDLAHDHRNNPRLACLGRAQTYHHYLCIPAE----KP 63
Query: 459 AAQQRPQRLQHRAARIVRVEVADEC 385
+ RP L H+ R+ V + DEC
Sbjct: 64 IEEWRPSELGHKLDRLAEVIIIDEC 88
>SB_57874| Best HMM Match : LIM (HMM E-Value=0.44)
Length = 1037
Score = 29.1 bits (62), Expect = 4.0
Identities = 24/85 (28%), Positives = 35/85 (41%)
Frame = -2
Query: 639 NGAMRYAVIMLRVLDGVHVLQPLRPASYLVVELPAGALRGNELSVRHDAVVPREVAALHA 460
+G +AV M R + V VL P ++ P A G + H +P E
Sbjct: 635 SGKTEWAVSMFRGRNVV-VLTPENDLAHDHRNNPRLACAGRAQTYHHYLCIPAE----KP 689
Query: 459 AAQQRPQRLQHRAARIVRVEVADEC 385
+ RP L H+ R+ V + DEC
Sbjct: 690 IEEWRPSELGHKLDRLAEVIIIDEC 714
>SB_10740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 110
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 395 PMNATPMDLELYP*VCAPTCSQPEPSYTLPLPPTRNEGPMS 273
P+ PM + + C S+ E +Y++ L RN+GP S
Sbjct: 56 PLGYPPMHVPAWQITCETLRSRDERAYSIQLTDRRNKGPRS 96
>SB_5396| Best HMM Match : DEAD (HMM E-Value=0.73)
Length = 1017
Score = 29.1 bits (62), Expect = 4.0
Identities = 24/85 (28%), Positives = 35/85 (41%)
Frame = -2
Query: 639 NGAMRYAVIMLRVLDGVHVLQPLRPASYLVVELPAGALRGNELSVRHDAVVPREVAALHA 460
+G +AV M R + V VL P ++ P A G + H +P E
Sbjct: 708 SGKTEWAVSMFRGRNVV-VLTPENDLAHDHRNNPRLACAGRAQTYHHYLCIPAE----KP 762
Query: 459 AAQQRPQRLQHRAARIVRVEVADEC 385
+ RP L H+ R+ V + DEC
Sbjct: 763 IEEWRPSELGHKLDRLAEVIIIDEC 787
>SB_366| Best HMM Match : ResIII (HMM E-Value=0.28)
Length = 1104
Score = 29.1 bits (62), Expect = 4.0
Identities = 24/85 (28%), Positives = 35/85 (41%)
Frame = -2
Query: 639 NGAMRYAVIMLRVLDGVHVLQPLRPASYLVVELPAGALRGNELSVRHDAVVPREVAALHA 460
+G +AV M R + V VL P ++ P A G + H +P E
Sbjct: 791 SGKTEWAVSMFRGRNVV-VLTPENDLAHDHRNNPRLACAGRAQTYHHYLCIPAE----KP 845
Query: 459 AAQQRPQRLQHRAARIVRVEVADEC 385
+ RP L H+ R+ V + DEC
Sbjct: 846 IEEWRPSELGHKLDRLAEVIIIDEC 870
>SB_59553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1003
Score = 29.1 bits (62), Expect = 4.0
Identities = 24/85 (28%), Positives = 34/85 (40%)
Frame = -2
Query: 639 NGAMRYAVIMLRVLDGVHVLQPLRPASYLVVELPAGALRGNELSVRHDAVVPREVAALHA 460
+G +AV M R V VL P ++ P A G + H +P E
Sbjct: 570 SGKTEWAVSMFRG-GNVVVLTPENDLAHDHRNNPRLACAGRAQTYHHYLCIPAE----KP 624
Query: 459 AAQQRPQRLQHRAARIVRVEVADEC 385
+ RP L H+ R+ V + DEC
Sbjct: 625 IEEWRPSELGHKLDRLAEVIIIDEC 649
>SB_13172| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 599
Score = 29.1 bits (62), Expect = 4.0
Identities = 24/85 (28%), Positives = 35/85 (41%)
Frame = -2
Query: 639 NGAMRYAVIMLRVLDGVHVLQPLRPASYLVVELPAGALRGNELSVRHDAVVPREVAALHA 460
+G +AV M R + V VL P ++ P A G + H +P E
Sbjct: 286 SGKTEWAVSMFRGRNVV-VLTPENDLAHDHRNNPRLACAGRAQTYHHYLCIPAE----KP 340
Query: 459 AAQQRPQRLQHRAARIVRVEVADEC 385
+ RP L H+ R+ V + DEC
Sbjct: 341 IEEWRPSELGHKLDRLAEVIIIDEC 365
>SB_5403| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 684
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +2
Query: 260 PCNTGTSDPRSWWEVTARCTRAPAGCTSARTPTGTTRGPS 379
P N G SD SW + CT++ +G T RT T T PS
Sbjct: 410 PVNGGWSDYSSW----SSCTKSCSGGTRTRTRTCTNPKPS 445
>SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +2
Query: 260 PCNTGTSDPRSWWEVTARCTRAPAGCTSARTPTGTTRGPS 379
P N G SD SW + CT++ G T RT T T PS
Sbjct: 379 PVNGGWSDYSSW----SSCTKSCGGGTRTRTRTCTNPKPS 414
>SB_147| Best HMM Match : LepA_C (HMM E-Value=0.73)
Length = 611
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = -3
Query: 449 SDRSASSIAPLGSSVLKLPMNATPMDLELYP*VCAPTCSQPEPSYTLPLPPT 294
+ R +SS + L SSV + +TP L P + + S P PS + LPPT
Sbjct: 276 ASRHSSSSSSL-SSVPSSFLASTPRAATLSPLSSSSSSSSPRPSRDIELPPT 326
>SB_32130| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 446
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +2
Query: 260 PCNTGTSDPRSWWEVTARCTRAPAGCTSARTPTGTTRGPS 379
P N G SD SW + CT++ G T RT T T PS
Sbjct: 294 PVNGGWSDYSSW----SSCTKSCGGGTRTRTRTCTNPKPS 329
>SB_29289| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 956
Score = 28.3 bits (60), Expect = 7.0
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = -2
Query: 639 NGAMRYAVIMLRVLDGVHVLQPLRPA-SYLVVELPAGALRGNELSVRHDAVVPREVAALH 463
+G +AV M R + V VL P + + + + P +++G++L + + E
Sbjct: 737 SGKTEWAVSMFRGRNAV-VLTPRKTTFATTIAKNPRLSVKGSKLYTTYLCITSGE----- 790
Query: 462 AAAQQRPQRLQHRAARIVRVEVADEC 385
A RP L H+ R+ V + DEC
Sbjct: 791 ADRGVRPSELGHKLDRLAEVIIIDEC 816
>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
Length = 739
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 329 PEPSYTLPLPPTRNEGPMSQYC 264
P P + P PP N GP +YC
Sbjct: 214 PPPPFGAPPPPALNGGPPREYC 235
>SB_14541| Best HMM Match : ResIII (HMM E-Value=0.66)
Length = 822
Score = 28.3 bits (60), Expect = 7.0
Identities = 24/85 (28%), Positives = 37/85 (43%)
Frame = -2
Query: 639 NGAMRYAVIMLRVLDGVHVLQPLRPASYLVVELPAGALRGNELSVRHDAVVPREVAALHA 460
+G +AV M R +GV VL P ++ P A++ + H +P E
Sbjct: 525 SGKTEWAVSMFRGRNGV-VLTPENDLAHDHRNNPRLAVKAQ--TYHHYLCIPAE----KP 577
Query: 459 AAQQRPQRLQHRAARIVRVEVADEC 385
+ RP L H+ R+ V + DEC
Sbjct: 578 IEEWRPSELGHKLDRLAEVIIIDEC 602
>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
Length = 509
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +2
Query: 245 PTTWRPCNTGTSDPRSWWEVTARCTRAPAGCTSARTPTGTTRGPSESHSSATST 406
P T P T+ P + T T P G T+ PT TT + + + T+T
Sbjct: 98 PATTTPTKPTTTTPPATTTPTKPTTTTPPGTTTPTKPTTTTPPATTTPTKPTTT 151
>SB_4087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1095
Score = 28.3 bits (60), Expect = 7.0
Identities = 24/85 (28%), Positives = 37/85 (43%)
Frame = -2
Query: 639 NGAMRYAVIMLRVLDGVHVLQPLRPASYLVVELPAGALRGNELSVRHDAVVPREVAALHA 460
+G +AV M R + V VL P ++ P A+R + H +P E
Sbjct: 713 SGKTEWAVSMFRGRNAV-VLTPENDLAHDHRNNPRLAVRAQ--TYHHYPCIPAE----KP 765
Query: 459 AAQQRPQRLQHRAARIVRVEVADEC 385
++RP L H+ R+ V + DEC
Sbjct: 766 IEERRPSELGHKLDRLAEVIIIDEC 790
>SB_32544| Best HMM Match : Extensin_2 (HMM E-Value=0.0062)
Length = 282
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -3
Query: 470 RSTPQRSSDRSASSI-APLGSSVLKLPMNATPMDLELYP*VCAPTCSQPEPSYTLPLPPT 294
+STP+ SS + + + +PL S L + + P AP S P+PS + PP
Sbjct: 147 KSTPRPSSPQPSFQVRSPLFKSAAFLSSPQPSLRVRTPPFKSAPLFSSPQPSLQVRSPPF 206
Query: 293 RN 288
++
Sbjct: 207 KS 208
>SB_12717| Best HMM Match : CheR (HMM E-Value=5.6)
Length = 685
Score = 28.3 bits (60), Expect = 7.0
Identities = 24/84 (28%), Positives = 34/84 (40%)
Frame = -2
Query: 636 GAMRYAVIMLRVLDGVHVLQPLRPASYLVVELPAGALRGNELSVRHDAVVPREVAALHAA 457
G +AV M R + V VL P ++ P A + H+ VP E
Sbjct: 542 GKTEWAVSMFRGRNVV-VLTPENDLAHDHCNNPRLACAERAQTYHHNLFVPAE----KPI 596
Query: 456 AQQRPQRLQHRAARIVRVEVADEC 385
+ RP L H+ R+ V + DEC
Sbjct: 597 EEWRPSELGHKLDRLAEVIIIDEC 620
>SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)
Length = 1600
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 326 PAGCTSARTPTGTTRGPSESHSSATSTRTI 415
P G R PT R SE HSS +TR+I
Sbjct: 417 PVGRHDGRRPTPHGRSISEPHSSINATRSI 446
>SB_31820| Best HMM Match : CG-1 (HMM E-Value=2.4)
Length = 992
Score = 27.9 bits (59), Expect = 9.3
Identities = 20/71 (28%), Positives = 28/71 (39%)
Frame = -2
Query: 597 DGVHVLQPLRPASYLVVELPAGALRGNELSVRHDAVVPREVAALHAAAQQRPQRLQHRAA 418
D V VL P ++ P A G + H +P E + RP L H+
Sbjct: 685 DRVGVLTPENDLAHDHRNNPRLACAGRAQTYHHYLCIPAE----KPIEEWRPSELGHKLD 740
Query: 417 RIVRVEVADEC 385
R+ V + DEC
Sbjct: 741 RLAEVIIIDEC 751
>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 27.9 bits (59), Expect = 9.3
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +2
Query: 215 AARSWCGISRPTTWRPCNTGTSDPRSWWEVTARCTRAPAGCTSARTP-TGTTRGPSESHS 391
A RS G PT+ T S PRS AR P+ ++ TP T TT + S
Sbjct: 186 ALRSSLGSLAPTSRTSTPTSRSTPRSRSRSRARTPSTPSTPSTPSTPSTITTSSRASSRG 245
Query: 392 SA 397
SA
Sbjct: 246 SA 247
>SB_24295| Best HMM Match : DUF1070 (HMM E-Value=3.9)
Length = 745
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -2
Query: 516 ELSVRHDAVVPREVAALHAAAQQRPQRLQHRAARIVRVEVADECDSD 376
++S R + V A + RP L H+ R+ V + DEC D
Sbjct: 613 DVSSRPSRIGEDRVGAEKPIEEWRPSELGHKLDRLAEVIIIDECCKD 659
>SB_18029| Best HMM Match : LIM (HMM E-Value=0.44)
Length = 885
Score = 27.9 bits (59), Expect = 9.3
Identities = 23/85 (27%), Positives = 35/85 (41%)
Frame = -2
Query: 639 NGAMRYAVIMLRVLDGVHVLQPLRPASYLVVELPAGALRGNELSVRHDAVVPREVAALHA 460
+G +AV M R + V VL P ++ P A G + H +P E
Sbjct: 517 SGKTEWAVSMFRGRNVV-VLTPENDLAHDHRNNPRLACAGRAQTYHHYPCIPAE----KP 571
Query: 459 AAQQRPQRLQHRAARIVRVEVADEC 385
+ RP L H+ R+ V + D+C
Sbjct: 572 IEEWRPSELGHKLDRLAEVIIIDDC 596
>SB_16849| Best HMM Match : RmlD_sub_bind (HMM E-Value=3.3)
Length = 355
Score = 27.9 bits (59), Expect = 9.3
Identities = 24/85 (28%), Positives = 34/85 (40%)
Frame = -2
Query: 639 NGAMRYAVIMLRVLDGVHVLQPLRPASYLVVELPAGALRGNELSVRHDAVVPREVAALHA 460
+G +AV M R + V VL P + P A G + H +P E
Sbjct: 167 SGKTGWAVSMFRGRNVV-VLTPENDLAQDHRNNPRLACAGRAQTYHHYLCIPAE----KP 221
Query: 459 AAQQRPQRLQHRAARIVRVEVADEC 385
+ RP L H+ R+ V + DEC
Sbjct: 222 IEEWRPSELGHKLDRLAEVTIIDEC 246
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,596,374
Number of Sequences: 59808
Number of extensions: 543843
Number of successful extensions: 2044
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2039
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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