Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0228
         (751 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY344830-1|AAR05801.1|  334|Anopheles gambiae ICHIT protein.           27   0.62 
U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.         25   2.5  
U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.         25   2.5  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    25   3.3  
AJ441131-8|CAD29637.1|  756|Anopheles gambiae putative 5-oxoprol...    24   4.4  
AJ439398-7|CAD28130.1| 1344|Anopheles gambiae putative 5-oxoprol...    24   4.4  
AY578809-1|AAT07314.1|  358|Anopheles gambiae Sloan-Kettering In...    24   5.8  
AJ302654-1|CAC35519.1|  168|Anopheles gambiae gSG2-like protein ...    24   5.8  
AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    24   5.8  
CR954256-4|CAJ14145.1| 1494|Anopheles gambiae tensin protein.          23   7.6  

>AY344830-1|AAR05801.1|  334|Anopheles gambiae ICHIT protein.
          Length = 334

 Score = 27.1 bits (57), Expect = 0.62
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
 Frame = +2

Query: 245 PTTWR-PCNTGT-SD-PRSWWEVTARCTRAPAGCTSARTPTGTTRGPSESHSSATSTRTI 415
           PTTW  P  T T SD PR     T      P   T+   PT TT          T+T T+
Sbjct: 162 PTTWSAPTTTTTWSDQPRPPTTTTTTVWTDPTATTTTHAPTTTTTWSDLPPPPPTTTTTV 221


>U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 6   AAPRHGPPPLGSCTRARSQLASH 74
           +A  H  PPLGS  +  SQ+  H
Sbjct: 365 SATPHNMPPLGSLCKTVSQIGQH 387


>U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 6   AAPRHGPPPLGSCTRARSQLASH 74
           +A  H  PPLGS  +  SQ+  H
Sbjct: 365 SATPHNMPPLGSLCKTVSQIGQH 387


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 181 HTVTPFCRTDAGCEELVRNIQTNHMEALQYWDIGPSFLVGGNG 309
           HT    CRT+A  E +V+ + +  +E L      P+FL  GNG
Sbjct: 126 HTAWGSCRTNAKGEAVVQLVDSLGLEVLN-TGTAPTFL--GNG 165


>AJ441131-8|CAD29637.1|  756|Anopheles gambiae putative
           5-oxoprolinase protein.
          Length = 756

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 354 GVRADVQ-PAGALVHLAVTSHQERGSDVP 271
           G RA +  PAG +V  AVT  ++ G D P
Sbjct: 287 GARAILSGPAGGVVGYAVTGMRDAGDDDP 315


>AJ439398-7|CAD28130.1| 1344|Anopheles gambiae putative
           5-oxoprolinase protein.
          Length = 1344

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 354 GVRADVQ-PAGALVHLAVTSHQERGSDVP 271
           G RA +  PAG +V  AVT  ++ G D P
Sbjct: 287 GARAILSGPAGGVVGYAVTGMRDAGDDDP 315


>AY578809-1|AAT07314.1|  358|Anopheles gambiae Sloan-Kettering
           Institute proto-oncogeneproduct protein.
          Length = 358

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +3

Query: 108 KAMGRFDPGARVVPGAAREPRHRPAHSHTL 197
           KA     PG  +V G A  P H  +  H L
Sbjct: 36  KAGAATGPGGAIVVGRAETPDHLASQHHAL 65


>AJ302654-1|CAC35519.1|  168|Anopheles gambiae gSG2-like protein
           protein.
          Length = 168

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 301 GNGKVYEGSGWLHVGAHTYGYNSRSIGVAFIGN 399
           G G  + G G    G  ++G   ++ GV F+GN
Sbjct: 113 GRGVPFFGQGGGQGGIPSFGSGQQNGGVPFLGN 145


>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +3

Query: 210 RWLRGAGAEYPDQPHGGLAILGH 278
           RWLRG G E   Q  G +    H
Sbjct: 683 RWLRGVGLELAHQKTGFMIFCTH 705


>CR954256-4|CAJ14145.1| 1494|Anopheles gambiae tensin protein.
          Length = 1494

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = -2

Query: 198 EGCDCVLDDDEAHGPRQVRHVHRDQTVPLLFTDDVAIGCY 79
           EG  C+   D    P   RH   +   PL    D+ + CY
Sbjct: 276 EGVRCLFTSDIYVIPITTRHFIYEIKHPLRLRGDILVRCY 315


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 761,962
Number of Sequences: 2352
Number of extensions: 17160
Number of successful extensions: 52
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 77339358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)