Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0228
(751 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical pr... 31 0.66
Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical pr... 31 0.66
U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical pr... 30 2.0
U23178-5|AAN63417.1| 439|Caenorhabditis elegans Vh1 dual-specif... 30 2.0
U23178-4|AAK68300.1| 606|Caenorhabditis elegans Vh1 dual-specif... 30 2.0
U23178-3|AAK68299.1| 657|Caenorhabditis elegans Vh1 dual-specif... 30 2.0
AY585194-1|AAS91377.1| 657|Caenorhabditis elegans VH1-like phos... 30 2.0
AC024810-19|AAF60770.1| 427|Caenorhabditis elegans Hypothetical... 30 2.0
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 29 2.7
U13072-7|AAK31398.2| 382|Caenorhabditis elegans Nematode astaci... 29 4.7
U88170-4|AAB42245.2| 425|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z68338-5|CAA92758.1| 203|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z49130-1|CAA88965.2| 708|Caenorhabditis elegans Hypothetical pr... 28 8.1
U78953-1|AAB38323.1| 185|Caenorhabditis elegans basic helix-loo... 28 8.1
U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of ... 28 8.1
U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of ... 28 8.1
U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of ... 28 8.1
>Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical
protein F22G12.5 protein.
Length = 2396
Score = 31.5 bits (68), Expect = 0.66
Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Frame = -3
Query: 311 LPLPPTR-NEGPMSQYCKASMWL-----VWIFRTSSSQPASVLQKGVTVCWTMTRLTGRA 150
L LPPT N + C+ L ++ SSS P +V + TV ++TRL G
Sbjct: 620 LQLPPTTVNHRDLWIVCRVDRILSADTAAELYMKSSSDPKAVAKLQKTVSMSLTRLAGHR 679
Query: 149 RYDTCTGIKPSHCFLLTTSQSAAISVRSE-LRASASTTAEWRRAMSRSGA 3
+ T KP L + S S S L +S ST + W S+SGA
Sbjct: 680 QRFAWTA-KPLFPELRSNHSSTISSTTSPMLSSSTSTLSGW----SKSGA 724
>Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical
protein F22G12.5 protein.
Length = 2396
Score = 31.5 bits (68), Expect = 0.66
Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Frame = -3
Query: 311 LPLPPTR-NEGPMSQYCKASMWL-----VWIFRTSSSQPASVLQKGVTVCWTMTRLTGRA 150
L LPPT N + C+ L ++ SSS P +V + TV ++TRL G
Sbjct: 620 LQLPPTTVNHRDLWIVCRVDRILSADTAAELYMKSSSDPKAVAKLQKTVSMSLTRLAGHR 679
Query: 149 RYDTCTGIKPSHCFLLTTSQSAAISVRSE-LRASASTTAEWRRAMSRSGA 3
+ T KP L + S S S L +S ST + W S+SGA
Sbjct: 680 QRFAWTA-KPLFPELRSNHSSTISSTTSPMLSSSTSTLSGW----SKSGA 724
>U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical
protein F59A6.3 protein.
Length = 786
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = +2
Query: 233 GISRPTTWRPCNTGTSDPRSWWEVTARCTRAPAGCTSARTPTGTTR----GPSESHSSAT 400
GIS+ TT P T TS+P + T T P+ + T GTT+ GPS + S
Sbjct: 406 GISQSTTSGP--TTTSEPSTTSGSTVSDTSGPSTTSGPSTTLGTTQSTTSGPSTTPGSTI 463
Query: 401 ST 406
ST
Sbjct: 464 ST 465
>U23178-5|AAN63417.1| 439|Caenorhabditis elegans Vh1
dual-specificity phosphatasefamily protein 1, isoform c
protein.
Length = 439
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 317 TRAPAGCTSARTPTGTTRGPSESHSSATS 403
T PAG +S TP+G+ P+ + SSA S
Sbjct: 382 TEVPAGSSSISTPSGSQSTPASASSSAAS 410
>U23178-4|AAK68300.1| 606|Caenorhabditis elegans Vh1
dual-specificity phosphatasefamily protein 1, isoform b
protein.
Length = 606
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 317 TRAPAGCTSARTPTGTTRGPSESHSSATS 403
T PAG +S TP+G+ P+ + SSA S
Sbjct: 486 TEVPAGSSSISTPSGSQSTPASASSSAAS 514
>U23178-3|AAK68299.1| 657|Caenorhabditis elegans Vh1
dual-specificity phosphatasefamily protein 1, isoform a
protein.
Length = 657
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 317 TRAPAGCTSARTPTGTTRGPSESHSSATS 403
T PAG +S TP+G+ P+ + SSA S
Sbjct: 537 TEVPAGSSSISTPSGSQSTPASASSSAAS 565
>AY585194-1|AAS91377.1| 657|Caenorhabditis elegans VH1-like
phosphatase 1 protein.
Length = 657
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 317 TRAPAGCTSARTPTGTTRGPSESHSSATS 403
T PAG +S TP+G+ P+ + SSA S
Sbjct: 537 TEVPAGSSSISTPSGSQSTPASASSSAAS 565
>AC024810-19|AAF60770.1| 427|Caenorhabditis elegans Hypothetical
protein Y54E10A.16a protein.
Length = 427
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = -2
Query: 207 RPAEGCDCVLDDDEAHGPRQVRHVHRDQTVPLLFTDDVAIGCYFCEKRAESEREYNCRVE 28
RP G +LD+ E GP +V +V+ D + D +G F + CRV+
Sbjct: 97 RPDRGKFTILDNAEVAGPEEVLNVNFDSEILQRIFSDPKLGIQFLARYGLIPNTRVCRVQ 156
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +2
Query: 248 TTWRPCNTGTSDPRSWWEVTARCTRAPAGCTSARTPTGTTRGPSESHSSATSTRT 412
TT P T T + T T P T+ TPT TT P+ + ++ T+T T
Sbjct: 128 TTTTPTTTTTETTTTPTTTTTETTTTPT--TTTTTPTTTTTTPTTTTTTPTTTTT 180
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +2
Query: 245 PTTWRPCNTGTSDPRSWWEVTARCTRAPAGCTSARTPTGTTRGPSESHSSATSTRT 412
PTT T T + T T T+ TPT TT P+ + ++ T+T T
Sbjct: 132 PTTTTTETTTTPTTTTTETTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTT 187
>U13072-7|AAK31398.2| 382|Caenorhabditis elegans Nematode astacin
protease protein 7 protein.
Length = 382
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 227 SSSQPASVLQKGVTVC-WTMTRLTGRARYDTCTGIKPSHC 111
+S++P+S + +TVC WT R A Y + + P C
Sbjct: 340 NSNKPSSQCEDRITVCWWTADRCRSPAIYQVMSSLCPKTC 379
>U88170-4|AAB42245.2| 425|Caenorhabditis elegans Hypothetical
protein C10G11.6 protein.
Length = 425
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = -3
Query: 353 VCAPTCSQPEPSYTLPLPPTRNEGPMSQYCKASMWLVWIFRTSSSQPASVLQKGV 189
+ +P +P PS ++PLPP + P S Y ++ + ++S+S S L K +
Sbjct: 172 IVSPDVRRPPPSLSIPLPP-MHIPPPSVYFISTPSIYSTAKSSTSTVTSKLSKAI 225
>Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical
protein C49C3.13 protein.
Length = 499
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 248 TTWRPCNTGTSDPRSWWEVTARCTRAPAGCTSARTPTGTTRGPSESHSSATST 406
TT P T T+ + T T TS TPT TT P+ + +++T+T
Sbjct: 279 TTTTPTTTPTTTTTTPTTTTTESTTTET--TSTTTPTTTTTAPTTTTTASTTT 329
>Z68338-5|CAA92758.1| 203|Caenorhabditis elegans Hypothetical
protein T24B8.6 protein.
Length = 203
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 383 TPMDLELYP*-VCAPTCSQPEPSYTLPLPPTRNEGPMSQYCKASMWLVWIFRTSSSQPAS 207
TP +YP VC+ P PSYT P P +Q+ +S + ++ SSS AS
Sbjct: 133 TPEQSPVYPQSVCSMMAQTPSPSYTSPYYPPPQMMSSNQHDMSSHY----YQESSSSSAS 188
>Z49130-1|CAA88965.2| 708|Caenorhabditis elegans Hypothetical
protein T06D8.2 protein.
Length = 708
Score = 27.9 bits (59), Expect = 8.1
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +2
Query: 248 TTWRP-CNTGTSDPRS--WWEVTARCTRAPAGCTSARTPTGTTR-GPSESHSSATST 406
T RP N S RS WEV R T + + RTP+ R PS S S++TS+
Sbjct: 333 TPKRPQTNDSVSTRRSSTTWEVPIRPTTMNSQISRKRTPSPVVRKAPSSSSSNSTSS 389
>U78953-1|AAB38323.1| 185|Caenorhabditis elegans basic
helix-loop-helix DNA bindingprotein HLH-3 protein.
Length = 185
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 383 TPMDLELYP*-VCAPTCSQPEPSYTLPLPPTRNEGPMSQYCKASMWLVWIFRTSSSQPAS 207
TP +YP VC+ P PSYT P P +Q+ +S + ++ SSS AS
Sbjct: 100 TPEQSPVYPQSVCSMMAQTPSPSYTSPYYPPPQMMSSNQHDMSSHY----YQESSSSSAS 155
>U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform c protein.
Length = 1375
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/43 (32%), Positives = 16/43 (37%)
Frame = +2
Query: 284 PRSWWEVTARCTRAPAGCTSARTPTGTTRGPSESHSSATSTRT 412
PR V T P C S GTT G + S T T +
Sbjct: 507 PRPTVTVAVTQTARPQACVSLEVQAGTTMGKFHDYGSQTQTES 549
>U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform a protein.
Length = 1544
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/43 (32%), Positives = 16/43 (37%)
Frame = +2
Query: 284 PRSWWEVTARCTRAPAGCTSARTPTGTTRGPSESHSSATSTRT 412
PR V T P C S GTT G + S T T +
Sbjct: 507 PRPTVTVAVTQTARPQACVSLEVQAGTTMGKFHDYGSQTQTES 549
>U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform b protein.
Length = 1720
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/43 (32%), Positives = 16/43 (37%)
Frame = +2
Query: 284 PRSWWEVTARCTRAPAGCTSARTPTGTTRGPSESHSSATSTRT 412
PR V T P C S GTT G + S T T +
Sbjct: 507 PRPTVTVAVTQTARPQACVSLEVQAGTTMGKFHDYGSQTQTES 549
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,523,731
Number of Sequences: 27780
Number of extensions: 376094
Number of successful extensions: 1442
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1440
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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