Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0228
         (751 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    27   0.25 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.3  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   5.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   5.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.3  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +1

Query: 124 LIPVHVSYLARP-VSLVIVQHTVTPFCRTDAGCEELVRNIQTNHMEALQYWDIGPSFLVG 300
           ++ + V Y++ P +S+       TP  R  A  E+ +     N +   Q     P+FL  
Sbjct: 181 ILAIKVYYISCPEISVNFAHFPATPTGREVALIEQTIGTCVANAVVIEQ-----PTFLCK 235

Query: 301 GNGKVYEGSGWLH 339
           G+GK Y  SG  H
Sbjct: 236 GDGKWYLPSGGCH 248


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -3

Query: 131  GIK--PSHCFLLTTSQSAAISVRSELRASASTTAEWRRAMSRSG 6
            G+K  P HC     +  A I++++ + +S S    WR     +G
Sbjct: 1165 GVKSAPIHCQTEQDAPEAPIAIKALVMSSESILVSWRPPSQPNG 1208


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 314 TLPLPPTRNEGPMSQY 267
           T+P+P   N+G ++QY
Sbjct: 55  TIPVPQAANKGMINQY 70


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 84  CYFCEKRAESEREYNC 37
           C  C++R E +  Y+C
Sbjct: 274 CSLCQRRFEEQGNYSC 289


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 12/72 (16%)
 Frame = -2

Query: 510 SVRHDAVVPREVAALHAAAQQRPQ-RLQHRAA--------RIVRVEVA---DECDSDGPR 367
           +VR   V  RE A + AA QQ    R Q +A         R++   V    D CD    +
Sbjct: 137 AVRFGRVPKREKARILAAMQQSSHSRSQEKAVAAELEDEQRLLATVVQAHLDTCDFTRDK 196

Query: 366 VVPVGVRADVQP 331
           V P+ VRA   P
Sbjct: 197 VAPILVRARETP 208



 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 509 RCATTR*SPARWPRST 462
           +CAT+  S  RWP ++
Sbjct: 770 QCATSNYSTTRWPATS 785


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 219 AASVRPAEGCDCVLDDDEAHGPRQVRHVHRDQTVPLLFTDDV 94
           A++  P    D V DD E  G  + + V +    PLL  +D+
Sbjct: 684 ASATTPPPQVDEV-DDKELSGAEEEKEVEKALLKPLLSLEDL 724


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,142
Number of Sequences: 438
Number of extensions: 4386
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)