Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0228
(751 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g03090.2 68414.m00284 methylcrotonyl-CoA carboxylase alpha ch... 32 0.47
At1g03090.1 68414.m00283 methylcrotonyl-CoA carboxylase alpha ch... 32 0.47
At3g26240.1 68416.m03274 DC1 domain-containing protein contains ... 30 1.4
At5g10020.1 68418.m01161 leucine-rich repeat transmembrane prote... 29 2.5
At2g02630.1 68415.m00202 DC1 domain-containing protein contains ... 29 2.5
At1g70990.1 68414.m08190 proline-rich family protein 29 2.5
At3g01510.1 68416.m00077 5'-AMP-activated protein kinase beta-1 ... 29 3.3
At5g55930.1 68418.m06976 oligopeptide transporter OPT family pro... 29 4.4
At5g05680.1 68418.m00625 nuclear pore complex protein-related co... 29 4.4
At5g37620.1 68418.m04531 DC1 domain-containing protein contains ... 28 5.8
At5g37850.1 68418.m04557 pfkB-type carbohydrate kinase family pr... 28 7.6
At4g01760.1 68417.m00229 DC1 domain-containing protein similar t... 28 7.6
At2g31920.1 68415.m03899 expressed protein 28 7.6
At1g27750.1 68414.m03391 ubiquitin system component Cue domain-c... 28 7.6
>At1g03090.2 68414.m00284 methylcrotonyl-CoA carboxylase alpha
chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase
1 (MCCA) nearly identical to SP|Q42523
Methylcrotonyl-CoA carboxylase alpha chain,
mitochondrial precursor (EC 6.4.1.4)
(3-Methylcrotonyl-CoA carboxylase 1) (MCCase alpha
subunit) (3-methylcrotonyl-CoA:carbon dioxide ligase
alpha subunit) {Arabidopsis thaliana}
Length = 734
Score = 31.9 bits (69), Expect = 0.47
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = -2
Query: 444 PQRLQHRAARIVRVEVADECDSDGPRVVPVGVRADVQPAGALVHLAVTSHQERGSDVPVL 265
P R+ H A + + +E +EC+ G ++ +GVR QP G+ + E G+D P L
Sbjct: 539 PFRVHHEAKQTIELEWNNECEGTGSNLISLGVR--YQPDGSYL-------IEEGNDSPSL 589
Query: 264 Q 262
+
Sbjct: 590 E 590
>At1g03090.1 68414.m00283 methylcrotonyl-CoA carboxylase alpha
chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase
1 (MCCA) nearly identical to SP|Q42523
Methylcrotonyl-CoA carboxylase alpha chain,
mitochondrial precursor (EC 6.4.1.4)
(3-Methylcrotonyl-CoA carboxylase 1) (MCCase alpha
subunit) (3-methylcrotonyl-CoA:carbon dioxide ligase
alpha subunit) {Arabidopsis thaliana}
Length = 714
Score = 31.9 bits (69), Expect = 0.47
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = -2
Query: 444 PQRLQHRAARIVRVEVADECDSDGPRVVPVGVRADVQPAGALVHLAVTSHQERGSDVPVL 265
P R+ H A + + +E +EC+ G ++ +GVR QP G+ + E G+D P L
Sbjct: 519 PFRVHHEAKQTIELEWNNECEGTGSNLISLGVR--YQPDGSYL-------IEEGNDSPSL 569
Query: 264 Q 262
+
Sbjct: 570 E 570
>At3g26240.1 68416.m03274 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 922
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Frame = -2
Query: 198 EGCDCVLDDDEAHGPRQVRHVHRDQTVPLLF---TDDVAIGCYFCEKRAESERE-YNC 37
E CD L A P+QVR+ H +PL + T D+ C CE + E Y C
Sbjct: 764 EECDYALCFKCATLPQQVRYKHDKHILPLSYGKKTSDMTYWCEACEGKINPEEGFYRC 821
>At5g10020.1 68418.m01161 leucine-rich repeat transmembrane protein
kinase, putative receptor-like protein kinase ERECTA,
Arabidopsis thaliana, EMBL:AC004484
Length = 1048
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 577 LENVDSIKNA*HYHSVSHSAVLGVFRSWTSVNSY 678
+EN+ SI N + ++SH+A+ G F S S+ S+
Sbjct: 215 MENISSISNTLRHLNLSHNALNGKFFSEESIGSF 248
>At2g02630.1 68415.m00202 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 440
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -2
Query: 195 GCDCVLDDDEAHGPRQVRHVHRDQTVPLLFTDDVAIGCYFCEKRAESEREYNC 37
GCD +L + A PR+ H + L+F +D C C R + Y C
Sbjct: 193 GCDFILHETCADAPRRKVHPLHPHPLKLIFYEDNCFHCKAC-WRTSTAFGYRC 244
>At1g70990.1 68414.m08190 proline-rich family protein
Length = 176
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = -3
Query: 395 PMNATPMDLELYP*VCAPTCSQPEPSYTLPLPPTRNEGPMSQYC 264
P+ TP L+ P P S P PS P PP P YC
Sbjct: 81 PIKCTPC-LQNIPPPSPPPPSPPPPSQACPPPPLPPSPPKKSYC 123
>At3g01510.1 68416.m00077 5'-AMP-activated protein kinase beta-1
subunit-related contains similarity to Swiss-Prot:P80387
5'-AMP-activated protein kinase, beta-1 subunit (AMPK
beta-1 chain) (AMPKb) (40 kDa subunit) [Sus scrofa]
Length = 591
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +1
Query: 277 IGPSFLVGGNGKVYEGSGWLHVGA-HTYGYNSR 372
IG SF GNG+V++G G ++G+ +G+N R
Sbjct: 22 IGSSFR-SGNGRVFDGRGIAYLGSREKFGFNRR 53
>At5g55930.1 68418.m06976 oligopeptide transporter OPT family
protein similar to SP|P40900 Sexual differentiation
process protein isp4 {Schizosaccharomyces pombe},
oligopeptide transporter Opt1p [Candida albicans]
GI:2367386; contains Pfam profile PF03169: OPT
oligopeptide transporter protein
Length = 755
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 307 GKVYEGSGWLHVGAHTYGYNSRSIGVAFIGNF 402
G +Y G +V TYGY S S + F+G+F
Sbjct: 501 GYLYPGKPLANVAFKTYGYISMSQALYFVGDF 532
>At5g05680.1 68418.m00625 nuclear pore complex protein-related
contains weak similarity to Nuclear pore complex protein
Nup88 (Nucleoporin Nup88) (88 kDa nuclear pore complex
protein) (Swiss-Prot:Q99567) [Homo sapiens]
Length = 810
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 82 AADCDVVSKKQWDGLIPVHVS 144
+ +C V K WD L+P+HVS
Sbjct: 545 SGECIVAEMKTWDLLLPIHVS 565
>At5g37620.1 68418.m04531 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 652
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -2
Query: 228 QLLAASVRPAEGCDCVLDDDEAHGPRQVRHVHRDQTVPLLFTDDVAIGCYFC 73
Q+L+ + C+ L A+ PR+ HV+R+ LL + + C+ C
Sbjct: 409 QILSEPFYSCKQCNFKLHQKCANHPRKKHHVYRNLPFTLLTSGNEIFQCWLC 460
>At5g37850.1 68418.m04557 pfkB-type carbohydrate kinase family
protein contains Pfam profile: PF00294 pfkB family
carbohydrate kinase
Length = 309
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = -2
Query: 243 LDIPHQLLAASVRPAEGCDCVLDDD-EAHGPRQVRHVHRDQTVPL 112
L++ ++L + + CD V+ D+ + + P ++ HV+R++ VPL
Sbjct: 106 LEVINKLRSVNPNLTYVCDPVMGDEGKLYVPEELVHVYREKVVPL 150
>At4g01760.1 68417.m00229 DC1 domain-containing protein similar to
T15B16.10 similar to A. thaliana CHP-rich proteins
encoded by T10M13, GenBank accession number AF001308
Length = 667
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -2
Query: 231 HQLLAASVRPAEGCDCVLDDDEAHGPRQVRHVHRDQTVPLLFTDDVAIGCYFCEK 67
H + S CD +L + A PR+ HV ++ + L+ ++ GC C K
Sbjct: 411 HPISPQSFYGCMDCDFILHQNCAGFPRRKWHVLHNERLALVTSEVNIFGCSACHK 465
>At2g31920.1 68415.m03899 expressed protein
Length = 585
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 351 VRADVQPAGALVHLAVTSHQERGSDVPVLQGLHVV 247
+R+D G +++ H E+G VPV++GL V
Sbjct: 78 IRSDEIQLGQFIYICGGLHVEKGCPVPVIRGLKPV 112
>At1g27750.1 68414.m03391 ubiquitin system component Cue
domain-containing protein very low similarity to ASC-1
complex subunit P100 [Homo sapiens] GI:12061187;
contains Pfam profile PF02845: CUE domain
Length = 1973
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 326 PAGCTSARTPTGTTRGPSESHSSATSTR 409
P G + TP+ + RGPS+ S++T R
Sbjct: 454 PRGLLNQHTPSPSARGPSDLRSNSTDRR 481
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,707,538
Number of Sequences: 28952
Number of extensions: 350212
Number of successful extensions: 1448
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1444
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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