Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0227
(761 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF592537-1|ABQ95983.1| 593|Tribolium castaneum beta-N-acetylglu... 23 3.5
EF222292-1|ABN79652.1| 354|Tribolium castaneum cardioactive pep... 23 3.5
AY884062-1|AAX84203.1| 712|Tribolium castaneum laccase 2B protein. 23 3.5
AY453651-1|AAR89057.1| 199|Tribolium castaneum serrate protein. 23 3.5
AJ457831-1|CAD29886.1| 249|Tribolium castaneum helix-loop-helix... 23 3.5
EU019709-1|ABU25221.1| 540|Tribolium castaneum aspartate 1-deca... 22 4.6
EF222299-1|ABN79659.1| 136|Tribolium castaneum ion transport pe... 21 8.1
EF222298-1|ABN79658.1| 120|Tribolium castaneum ion transport pe... 21 8.1
EF222297-1|ABN79657.1| 140|Tribolium castaneum ion transport pe... 21 8.1
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 21 8.1
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 21 8.1
>EF592537-1|ABQ95983.1| 593|Tribolium castaneum
beta-N-acetylglucosaminidase NAG2 protein.
Length = 593
Score = 22.6 bits (46), Expect = 3.5
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = +3
Query: 627 RRFHRHQERL 656
RRF+RH+ERL
Sbjct: 561 RRFYRHRERL 570
>EF222292-1|ABN79652.1| 354|Tribolium castaneum cardioactive
peptide receptor 2 protein.
Length = 354
Score = 22.6 bits (46), Expect = 3.5
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +2
Query: 143 KSVWKCFSLLIPLLHVP 193
+++W LLIP+ H+P
Sbjct: 231 RTIWSKSKLLIPVGHIP 247
Score = 21.8 bits (44), Expect = 6.1
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +1
Query: 622 FVDASTGTKSVYVIRHLPVERSTFLSSELNFFG 720
F+ A S YV+ L ++R ++ +NF G
Sbjct: 124 FLQAVVTYSSTYVLVALSIDRYDAITHPMNFSG 156
>AY884062-1|AAX84203.1| 712|Tribolium castaneum laccase 2B protein.
Length = 712
Score = 22.6 bits (46), Expect = 3.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 623 SSTLPPAPRASMLYDIS 673
S T PP+P S ++D+S
Sbjct: 532 SFTFPPSPPLSQIHDLS 548
>AY453651-1|AAR89057.1| 199|Tribolium castaneum serrate protein.
Length = 199
Score = 22.6 bits (46), Expect = 3.5
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -2
Query: 88 SSSPPQLGWFGHCQIRSGH*HRC 20
+S+P G GHC G HRC
Sbjct: 32 NSAPSICGEHGHCVNLPGVGHRC 54
>AJ457831-1|CAD29886.1| 249|Tribolium castaneum helix-loop-helix
transcription factor protein.
Length = 249
Score = 22.6 bits (46), Expect = 3.5
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +2
Query: 455 SVRRKLLGPKKCSRTRSKLPWRP 523
SVR L ++C + PWRP
Sbjct: 226 SVRPLSLVVRRCEEPTEEKPWRP 248
>EU019709-1|ABU25221.1| 540|Tribolium castaneum aspartate
1-decarboxylase protein.
Length = 540
Score = 22.2 bits (45), Expect = 4.6
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -3
Query: 378 RGRRSVKTEIDSFDKNLKAEAAPY 307
RGR V ++ +++L+ AAP+
Sbjct: 263 RGRMDVSHLVEEIERSLREGAAPF 286
>EF222299-1|ABN79659.1| 136|Tribolium castaneum ion transport
peptide isoform C protein.
Length = 136
Score = 21.4 bits (43), Expect = 8.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 233 SSPKDKKTASVPNSFTKMS 289
SSP + A +P+ FTK S
Sbjct: 29 SSPAGRSPAFLPHHFTKRS 47
>EF222298-1|ABN79658.1| 120|Tribolium castaneum ion transport
peptide isoform B protein.
Length = 120
Score = 21.4 bits (43), Expect = 8.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 233 SSPKDKKTASVPNSFTKMS 289
SSP + A +P+ FTK S
Sbjct: 29 SSPAGRSPAFLPHHFTKRS 47
>EF222297-1|ABN79657.1| 140|Tribolium castaneum ion transport
peptide isoform A protein.
Length = 140
Score = 21.4 bits (43), Expect = 8.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 233 SSPKDKKTASVPNSFTKMS 289
SSP + A +P+ FTK S
Sbjct: 29 SSPAGRSPAFLPHHFTKRS 47
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 21.4 bits (43), Expect = 8.1
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Frame = -3
Query: 501 RVLEHFLGPKSFLRTESPQAIY-DSLVKRFEEAKKKVEDGLTRGR---RSVKTEIDSFDK 334
R+L + LGP + L E P A + L +F +++ D + + ++ ++ D
Sbjct: 6 RLLNNLLGPYNVL--ERPVANESEPLEVKFGLTLQQIIDVDEKNQLLITNIWLSLEWNDY 63
Query: 333 NLKAEAAPYNNELDLDIFVKLFGTDAVFLSFGDDKGFD 220
NLK + Y DL I V + D+GFD
Sbjct: 64 NLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFD 101
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 21.4 bits (43), Expect = 8.1
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Frame = -3
Query: 501 RVLEHFLGPKSFLRTESPQAIY-DSLVKRFEEAKKKVEDGLTRGR---RSVKTEIDSFDK 334
R+L + LGP + L E P A + L +F +++ D + + ++ ++ D
Sbjct: 6 RLLNNLLGPYNVL--ERPVANESEPLEVKFGLTLQQIIDVDEKNQLLITNIWLSLEWNDY 63
Query: 333 NLKAEAAPYNNELDLDIFVKLFGTDAVFLSFGDDKGFD 220
NLK + Y DL I V + D+GFD
Sbjct: 64 NLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFD 101
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,611
Number of Sequences: 336
Number of extensions: 3605
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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