Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0227
(761 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0554 + 29929860-29929959,29932944-29934220 32 0.43
02_02_0631 - 12397517-12398452,12398693-12398819,12398971-123991... 30 1.7
09_04_0448 + 17692650-17692970,17693461-17693811 30 2.3
07_03_0156 - 14524757-14526403 29 5.3
04_03_1033 + 21861826-21863046,21863153-21863380,21863474-218637... 29 5.3
12_01_0026 + 219663-220843,222201-222447,222574-224535 28 7.1
11_01_0026 + 193383-194566,195726-195972,196099-198063 28 7.1
01_01_0994 - 7861310-7862119,7862378-7862498,7862718-7862901,786... 28 7.1
07_01_1069 - 9493001-9493176,9493269-9493300,9493405-9493499,949... 28 9.3
03_05_0703 - 26942117-26942221,26943765-26945579 28 9.3
>02_05_0554 + 29929860-29929959,29932944-29934220
Length = 458
Score = 32.3 bits (70), Expect = 0.43
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +2
Query: 254 TASVPNSFTKMSRSNSLLYGAASALRFLSNESISVLTDLRPLVSPSSTFFLASSN 418
+ S+PN + + N L+G ++ L L+ +S+L L P + S T+ L SS+
Sbjct: 227 STSLPNFYYGCGQDNEGLFGRSAGLIGLARNKLSLLYQLAPSLGYSFTYCLPSSS 281
>02_02_0631 -
12397517-12398452,12398693-12398819,12398971-12399154,
12399303-12399395,12400029-12400077,12400565-12400624,
12400689-12400730,12400840-12400992,12401075-12401206,
12401313-12401408,12401936-12402079,12402234-12402308,
12403896-12404021
Length = 738
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = -3
Query: 576 FNLTVS-LFGHDFNVLEFGGRQGNLDRVLEHFLGPKSFLRTESPQAIYDSLVK 421
F +TV LFGH +V E G G LDR+L+ G ++ + +++ + + ++V+
Sbjct: 218 FQMTVKPLFGHGLDVTELPGISGWLDRMLDVAFG-QTLVESQTSEVLGINIVQ 269
>09_04_0448 + 17692650-17692970,17693461-17693811
Length = 223
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 589 W*VRVLGVYYWFVDASTGTKSVYVIRHLPVER 684
W +R+ GV Y +VD KS ++RH PV +
Sbjct: 23 WALRLKGVDYEYVDEDLANKSEALLRHNPVTK 54
>07_03_0156 - 14524757-14526403
Length = 548
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -3
Query: 438 YDSLVKRFEEAKKKVEDGLTRGRR--SVKTEIDSFDKNLKAEAA 313
+ ++ R A ++V D L R RR ++TE DS + +AEAA
Sbjct: 15 HHAVATRDHAALRRVLDALPRARRPEEIRTEADSVAEEARAEAA 58
>04_03_1033 +
21861826-21863046,21863153-21863380,21863474-21863704,
21863808-21864070,21864189-21864660
Length = 804
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/38 (50%), Positives = 22/38 (57%)
Frame = +2
Query: 143 KSVWKCFSLLIPLLHVPRISSRILLKSNPLSSPKDKKT 256
K+V F L+PLL P I+ LLK L SPK KKT
Sbjct: 46 KAVLDRFEKLLPLLSSPVINIDHLLKH--LGSPKKKKT 81
>12_01_0026 + 219663-220843,222201-222447,222574-224535
Length = 1129
Score = 28.3 bits (60), Expect = 7.1
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 12/118 (10%)
Frame = -3
Query: 483 LGPKSFLRTESPQAIYDSLVKR---FEEAKKKVEDGLTRGRRSVKTEIDSFDKNLKA-EA 316
+ P+ FL S+ KR + ++K+++ + +R +T FD NL E
Sbjct: 925 VSPRHFLTKIQASLCSGSISKRKLSMSDDQEKLQESPSSLKRLHRTSSIPFDLNLPVDED 984
Query: 315 APYNNELDLDIFVKLFGT-----DAVFLSFGDD---KGFDFNKILDDILGTCSSGISK 166
P++ + D +G DA+ S K FDF+K+ DD+L S+ + K
Sbjct: 985 EPFDADDDSSSHENSYGNTEKSIDALLHSVDGSINFKPFDFDKLADDMLQEFSNILRK 1042
>11_01_0026 + 193383-194566,195726-195972,196099-198063
Length = 1131
Score = 28.3 bits (60), Expect = 7.1
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 12/118 (10%)
Frame = -3
Query: 483 LGPKSFLRTESPQAIYDSLVKR---FEEAKKKVEDGLTRGRRSVKTEIDSFDKNLKA-EA 316
+ P+ FL S+ KR + ++K+++ + +R +T FD NL E
Sbjct: 926 VSPRHFLTKIQASLCSGSISKRKLSISDDQEKLQESPSSSKRLHRTSSVPFDLNLPVDED 985
Query: 315 APYNNELDLDIFVKLFGT-----DAVFLSFGDD---KGFDFNKILDDILGTCSSGISK 166
P + + D +G DA+ S K FDF+K+ DD+L S+ + K
Sbjct: 986 EPLDADDDSSSHENSYGNTEKSIDALLHSVDGSINFKPFDFDKLADDMLQEFSNILRK 1043
>01_01_0994 -
7861310-7862119,7862378-7862498,7862718-7862901,
7862975-7863070,7863428-7863476,7863555-7863596,
7863684-7863836,7865631-7865705,7866462-7866587
Length = 551
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 576 FNLTVS-LFGHDFNVLEFGGRQGNLDRVLEHFLG 478
F +TV L GH +V EF G G LD++++ G
Sbjct: 94 FQMTVKPLIGHGLDVTEFPGISGWLDKLMDTAFG 127
>07_01_1069 -
9493001-9493176,9493269-9493300,9493405-9493499,
9493623-9493898,9493976-9494039,9498048-9498113,
9498283-9498413,9499722-9499859,9499964-9500079,
9500166-9500331,9500435-9500548,9500609-9500692,
9500995-9501073,9501134-9501337,9501999-9502096,
9502187-9502284,9502359-9502495,9502606-9502824,
9503541-9503743,9503856-9504005
Length = 881
Score = 27.9 bits (59), Expect = 9.3
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = -3
Query: 279 VKLFGTDAVFLSFGDDKGFD----FNKILDDILGTCSSGISKLKHFQTD 145
VKL G DAV + DDK D K++D +L T SS ++ K F D
Sbjct: 43 VKLSGIDAVSIKSEDDKVIDGKGIGRKVMDKVLQTYSSELAG-KEFAYD 90
>03_05_0703 - 26942117-26942221,26943765-26945579
Length = 639
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -3
Query: 645 GAGGSVDEPVIYSQDSYLP--RSVNFNLTVSLFGHDFNVL 532
G GG D+PV QD + P R ++ + +LF D VL
Sbjct: 313 GGGGEDDKPVACMQDVFRPPARGEDYTILQALFSVDMAVL 352
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,236,468
Number of Sequences: 37544
Number of extensions: 410950
Number of successful extensions: 1212
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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