Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0227
(761 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X04714-1|CAA28420.1| 4560|Homo sapiens apo-B100 precursor protein. 37 0.068
X04506-1|CAA28191.1| 4563|Homo sapiens protein ( Human mRNA for ... 37 0.068
M19828-1|AAB00481.1| 4563|Homo sapiens protein ( Human apolipopr... 37 0.068
M14081-1|AAA51752.1| 1670|Homo sapiens APOB protein. 37 0.068
M12480-1|AAA51751.1| 560|Homo sapiens APOB protein. 37 0.068
J02610-1|AAA35549.1| 4563|Homo sapiens protein ( Human apolipopr... 37 0.068
AY324608-1|AAP72970.1| 4563|Homo sapiens apolipoprotein B (inclu... 37 0.068
AC010872-1|AAX88848.1| 3929|Homo sapiens unknown protein. 37 0.068
M14162-1|AAB04636.1| 4563|Homo sapiens APOB protein. 36 0.16
BC036051-1|AAH36051.1| 407|Homo sapiens EGLN2 protein protein. 32 2.6
AY040565-1|AAK82943.1| 407|Homo sapiens estrogen-induced tag 6 ... 32 2.6
AJ310544-1|CAC42510.1| 407|Homo sapiens EGLN2 protein protein. 32 2.6
>X04714-1|CAA28420.1| 4560|Homo sapiens apo-B100 precursor protein.
Length = 4560
Score = 37.1 bits (82), Expect = 0.068
Identities = 47/214 (21%), Positives = 89/214 (41%), Gaps = 20/214 (9%)
Frame = -3
Query: 642 AGGSVDEPVIYSQDSYLPRSVNFNLTVSLFGH-DFNVLEFGGRQGNLDRVLEHFLGPKSF 466
A ++ +I+ ++YLP+ T++ FG +++E G + LE G + F
Sbjct: 648 ASAKIEGNLIFDPNNYLPKESMLKTTLTAFGFASADLIEIGLEGKGFEPTLEALFGKQGF 707
Query: 465 LRTESPQAIY-----------DSLVKRFEEAKK-KVEDGLTRGRRSVKTEIDSFDKNLKA 322
+A+Y LV F K K E + G + ++ K+LK+
Sbjct: 708 FPDSVNKALYWVNGQVPDGVSKVLVDHFGYTKDDKHEQDMVNG---IMLSVEKLIKDLKS 764
Query: 321 EAAPYNNELDLDIFVKLFGTDAVFLSFGDDKGFDFNKILDDILGTCS-SGISKL------ 163
+ P + ++++ G + F S D + K+L ++G + GI ++
Sbjct: 765 KEVP-----EARAYLRILGEELGFASLHDLQLL--GKLL--LMGARTLQGIPQMIGEVIR 815
Query: 162 KHFQTDFRTHLLFLDAELAYPTSTGLPLHLNLVG 61
K + DF H +F++ PT GL L ++ G
Sbjct: 816 KGSKNDFFLHYIFMENAFELPTGAGLQLQISSSG 849
>X04506-1|CAA28191.1| 4563|Homo sapiens protein ( Human mRNA for
apolipoprotein B-100. ).
Length = 4563
Score = 37.1 bits (82), Expect = 0.068
Identities = 47/214 (21%), Positives = 89/214 (41%), Gaps = 20/214 (9%)
Frame = -3
Query: 642 AGGSVDEPVIYSQDSYLPRSVNFNLTVSLFGH-DFNVLEFGGRQGNLDRVLEHFLGPKSF 466
A ++ +I+ ++YLP+ T++ FG +++E G + LE G + F
Sbjct: 651 ASAKIEGNLIFDPNNYLPKESMLKTTLTAFGFASADLIEIGLEGKGFEPTLEALFGKQGF 710
Query: 465 LRTESPQAIY-----------DSLVKRFEEAKK-KVEDGLTRGRRSVKTEIDSFDKNLKA 322
+A+Y LV F K K E + G + ++ K+LK+
Sbjct: 711 FPDSVNKALYWVNGQVPDGVSKVLVDHFGYTKDDKHEQDMVNG---IMLSVEKLIKDLKS 767
Query: 321 EAAPYNNELDLDIFVKLFGTDAVFLSFGDDKGFDFNKILDDILGTCS-SGISKL------ 163
+ P + ++++ G + F S D + K+L ++G + GI ++
Sbjct: 768 KEVP-----EARAYLRILGEELGFASLHDLQLL--GKLL--LMGARTLQGIPQMIGEVIR 818
Query: 162 KHFQTDFRTHLLFLDAELAYPTSTGLPLHLNLVG 61
K + DF H +F++ PT GL L ++ G
Sbjct: 819 KGSKNDFFLHYIFMENAFELPTGAGLQLQISSSG 852
>M19828-1|AAB00481.1| 4563|Homo sapiens protein ( Human apolipoprotein
B-100 (apoB) gene, exons 22 through 29. ).
Length = 4563
Score = 37.1 bits (82), Expect = 0.068
Identities = 47/214 (21%), Positives = 89/214 (41%), Gaps = 20/214 (9%)
Frame = -3
Query: 642 AGGSVDEPVIYSQDSYLPRSVNFNLTVSLFGH-DFNVLEFGGRQGNLDRVLEHFLGPKSF 466
A ++ +I+ ++YLP+ T++ FG +++E G + LE G + F
Sbjct: 651 ASAKIEGNLIFDPNNYLPKESMLKTTLTAFGFASADLIEIGLEGKGFEPTLEALFGKQGF 710
Query: 465 LRTESPQAIY-----------DSLVKRFEEAKK-KVEDGLTRGRRSVKTEIDSFDKNLKA 322
+A+Y LV F K K E + G + ++ K+LK+
Sbjct: 711 FPDSVNKALYWVNGQVPDGVSKVLVDHFGYTKDDKHEQDMVNG---IMLSVEKLIKDLKS 767
Query: 321 EAAPYNNELDLDIFVKLFGTDAVFLSFGDDKGFDFNKILDDILGTCS-SGISKL------ 163
+ P + ++++ G + F S D + K+L ++G + GI ++
Sbjct: 768 KEVP-----EARAYLRILGEELGFASLHDLQLL--GKLL--LMGARTLQGIPQMIGEVIR 818
Query: 162 KHFQTDFRTHLLFLDAELAYPTSTGLPLHLNLVG 61
K + DF H +F++ PT GL L ++ G
Sbjct: 819 KGSKNDFFLHYIFMENAFELPTGAGLQLQISSSG 852
>M14081-1|AAA51752.1| 1670|Homo sapiens APOB protein.
Length = 1670
Score = 37.1 bits (82), Expect = 0.068
Identities = 47/214 (21%), Positives = 89/214 (41%), Gaps = 20/214 (9%)
Frame = -3
Query: 642 AGGSVDEPVIYSQDSYLPRSVNFNLTVSLFGH-DFNVLEFGGRQGNLDRVLEHFLGPKSF 466
A ++ +I+ ++YLP+ T++ FG +++E G + LE G + F
Sbjct: 651 ASAKIEGNLIFDPNNYLPKESMLKTTLTAFGFASADLIEIGLEGKGFEPTLEALFGKQGF 710
Query: 465 LRTESPQAIY-----------DSLVKRFEEAKK-KVEDGLTRGRRSVKTEIDSFDKNLKA 322
+A+Y LV F K K E + G + ++ K+LK+
Sbjct: 711 FPDSVNKALYWVNGQVPDGVSKVLVDHFGYTKDDKHEQDMVNG---IMLSVEKLIKDLKS 767
Query: 321 EAAPYNNELDLDIFVKLFGTDAVFLSFGDDKGFDFNKILDDILGTCS-SGISKL------ 163
+ P + ++++ G + F S D + K+L ++G + GI ++
Sbjct: 768 KEVP-----EARAYLRILGEELGFASLHDLQLL--GKLL--LMGARTLQGIPQMIGEVIR 818
Query: 162 KHFQTDFRTHLLFLDAELAYPTSTGLPLHLNLVG 61
K + DF H +F++ PT GL L ++ G
Sbjct: 819 KGSKNDFFLHYIFMENAFELPTGAGLQLQISSSG 852
>M12480-1|AAA51751.1| 560|Homo sapiens APOB protein.
Length = 560
Score = 37.1 bits (82), Expect = 0.068
Identities = 47/214 (21%), Positives = 89/214 (41%), Gaps = 20/214 (9%)
Frame = -3
Query: 642 AGGSVDEPVIYSQDSYLPRSVNFNLTVSLFGH-DFNVLEFGGRQGNLDRVLEHFLGPKSF 466
A ++ +I+ ++YLP+ T++ FG +++E G + LE G + F
Sbjct: 167 ASAKIEGNLIFDPNNYLPKESMLKTTLTAFGFASADLIEIGLEGKGFEPTLEALFGKQGF 226
Query: 465 LRTESPQAIY-----------DSLVKRFEEAKK-KVEDGLTRGRRSVKTEIDSFDKNLKA 322
+A+Y LV F K K E + G + ++ K+LK+
Sbjct: 227 FPDSVNKALYWVNGQVPDGVSKVLVDHFGYTKDDKHEQDMVNG---IMLSVEKLIKDLKS 283
Query: 321 EAAPYNNELDLDIFVKLFGTDAVFLSFGDDKGFDFNKILDDILGTCS-SGISKL------ 163
+ P + ++++ G + F S D + K+L ++G + GI ++
Sbjct: 284 KEVP-----EARAYLRILGEELGFASLHDLQLL--GKLL--LMGARTLQGIPQMIGEVIR 334
Query: 162 KHFQTDFRTHLLFLDAELAYPTSTGLPLHLNLVG 61
K + DF H +F++ PT GL L ++ G
Sbjct: 335 KGSKNDFFLHYIFMENAFELPTGAGLQLQISSSG 368
>J02610-1|AAA35549.1| 4563|Homo sapiens protein ( Human apolipoprotein
B-100 mRNA, complete cds. ).
Length = 4563
Score = 37.1 bits (82), Expect = 0.068
Identities = 47/214 (21%), Positives = 89/214 (41%), Gaps = 20/214 (9%)
Frame = -3
Query: 642 AGGSVDEPVIYSQDSYLPRSVNFNLTVSLFGH-DFNVLEFGGRQGNLDRVLEHFLGPKSF 466
A ++ +I+ ++YLP+ T++ FG +++E G + LE G + F
Sbjct: 651 ASAKIEGNLIFDPNNYLPKESMLKTTLTAFGFASADLIEIGLEGKGFEPTLEALFGKQGF 710
Query: 465 LRTESPQAIY-----------DSLVKRFEEAKK-KVEDGLTRGRRSVKTEIDSFDKNLKA 322
+A+Y LV F K K E + G + ++ K+LK+
Sbjct: 711 FPDSVNKALYWVNGQVPDGVSKVLVDHFGYTKDDKHEQDMVNG---IMLSVEKLIKDLKS 767
Query: 321 EAAPYNNELDLDIFVKLFGTDAVFLSFGDDKGFDFNKILDDILGTCS-SGISKL------ 163
+ P + ++++ G + F S D + K+L ++G + GI ++
Sbjct: 768 KEVP-----EARAYLRILGEELGFASLHDLQLL--GKLL--LMGARTLQGIPQMIGEVIR 818
Query: 162 KHFQTDFRTHLLFLDAELAYPTSTGLPLHLNLVG 61
K + DF H +F++ PT GL L ++ G
Sbjct: 819 KGSKNDFFLHYIFMENAFELPTGAGLQLQISSSG 852
>AY324608-1|AAP72970.1| 4563|Homo sapiens apolipoprotein B (including
Ag(x) antigen) protein.
Length = 4563
Score = 37.1 bits (82), Expect = 0.068
Identities = 47/214 (21%), Positives = 89/214 (41%), Gaps = 20/214 (9%)
Frame = -3
Query: 642 AGGSVDEPVIYSQDSYLPRSVNFNLTVSLFGH-DFNVLEFGGRQGNLDRVLEHFLGPKSF 466
A ++ +I+ ++YLP+ T++ FG +++E G + LE G + F
Sbjct: 651 ASAKIEGNLIFDPNNYLPKESMLKTTLTAFGFASADLIEIGLEGKGFEPTLEALFGKQGF 710
Query: 465 LRTESPQAIY-----------DSLVKRFEEAKK-KVEDGLTRGRRSVKTEIDSFDKNLKA 322
+A+Y LV F K K E + G + ++ K+LK+
Sbjct: 711 FPDSVNKALYWVNGQVPDGVSKVLVDHFGYTKDDKHEQDMVNG---IMLSVEKLIKDLKS 767
Query: 321 EAAPYNNELDLDIFVKLFGTDAVFLSFGDDKGFDFNKILDDILGTCS-SGISKL------ 163
+ P + ++++ G + F S D + K+L ++G + GI ++
Sbjct: 768 KEVP-----EARAYLRILGEELGFASLHDLQLL--GKLL--LMGARTLQGIPQMIGEVIR 818
Query: 162 KHFQTDFRTHLLFLDAELAYPTSTGLPLHLNLVG 61
K + DF H +F++ PT GL L ++ G
Sbjct: 819 KGSKNDFFLHYIFMENAFELPTGAGLQLQISSSG 852
>AC010872-1|AAX88848.1| 3929|Homo sapiens unknown protein.
Length = 3929
Score = 37.1 bits (82), Expect = 0.068
Identities = 47/214 (21%), Positives = 89/214 (41%), Gaps = 20/214 (9%)
Frame = -3
Query: 642 AGGSVDEPVIYSQDSYLPRSVNFNLTVSLFGH-DFNVLEFGGRQGNLDRVLEHFLGPKSF 466
A ++ +I+ ++YLP+ T++ FG +++E G + LE G + F
Sbjct: 651 ASAKIEGNLIFDPNNYLPKESMLKTTLTAFGFASADLIEIGLEGKGFEPTLEALFGKQGF 710
Query: 465 LRTESPQAIY-----------DSLVKRFEEAKK-KVEDGLTRGRRSVKTEIDSFDKNLKA 322
+A+Y LV F K K E + G + ++ K+LK+
Sbjct: 711 FPDSVNKALYWVNGQVPDGVSKVLVDHFGYTKDDKHEQDMVNG---IMLSVEKLIKDLKS 767
Query: 321 EAAPYNNELDLDIFVKLFGTDAVFLSFGDDKGFDFNKILDDILGTCS-SGISKL------ 163
+ P + ++++ G + F S D + K+L ++G + GI ++
Sbjct: 768 KEVP-----EARAYLRILGEELGFASLHDLQLL--GKLL--LMGARTLQGIPQMIGEVIR 818
Query: 162 KHFQTDFRTHLLFLDAELAYPTSTGLPLHLNLVG 61
K + DF H +F++ PT GL L ++ G
Sbjct: 819 KGSKNDFFLHYIFMENAFELPTGAGLQLQISSSG 852
>M14162-1|AAB04636.1| 4563|Homo sapiens APOB protein.
Length = 4563
Score = 35.9 bits (79), Expect = 0.16
Identities = 47/214 (21%), Positives = 89/214 (41%), Gaps = 20/214 (9%)
Frame = -3
Query: 642 AGGSVDEPVIYSQDSYLPRSVNFNLTVSLFGH-DFNVLEFGGRQGNLDRVLEHFLGPKSF 466
A ++ +I+ ++YLP+ T++ FG +++E G + LE G + F
Sbjct: 651 ASAKIEGNLIFDPNNYLPKESMLKTTLTAFGFASADLIEIGLEGKGFEPTLEAPFGKQGF 710
Query: 465 LRTESPQAIY-----------DSLVKRFEEAKK-KVEDGLTRGRRSVKTEIDSFDKNLKA 322
+A+Y LV F K K E + G + ++ K+LK+
Sbjct: 711 FPDSVNKALYWVNGQVPDGVSKVLVDHFGYTKDDKHEQDMVNG---IMLSVEKLIKDLKS 767
Query: 321 EAAPYNNELDLDIFVKLFGTDAVFLSFGDDKGFDFNKILDDILGTCS-SGISKL------ 163
+ P + ++++ G + F S D + K+L ++G + GI ++
Sbjct: 768 KEVP-----EARAYLRILGEELGFASLHDLRLL--GKLL--LMGARTLQGIPQMIGEVIR 818
Query: 162 KHFQTDFRTHLLFLDAELAYPTSTGLPLHLNLVG 61
K + DF H +F++ PT GL L ++ G
Sbjct: 819 KGSKNDFFLHYIFMENAFELPTGAGLQLQISSSG 852
>BC036051-1|AAH36051.1| 407|Homo sapiens EGLN2 protein protein.
Length = 407
Score = 31.9 bits (69), Expect = 2.6
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = -3
Query: 657 IDALGAGGSVDEPVIYSQDSYLPRSVNFNLTVSLFGHDFNVLEFGGRQGNLDRVLEHFLG 478
++AL GG + + + SQ + PRS+ + + GH+ G ++D V+ H G
Sbjct: 210 VEALKRGGRLRDGQLVSQRAIPPRSIRGDQIAWVEGHEPGCRSIGALMAHVDAVIRHCAG 269
>AY040565-1|AAK82943.1| 407|Homo sapiens estrogen-induced tag 6
protein.
Length = 407
Score = 31.9 bits (69), Expect = 2.6
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = -3
Query: 657 IDALGAGGSVDEPVIYSQDSYLPRSVNFNLTVSLFGHDFNVLEFGGRQGNLDRVLEHFLG 478
++AL GG + + + SQ + PRS+ + + GH+ G ++D V+ H G
Sbjct: 210 VEALKRGGRLRDGQLVSQRAIPPRSIRGDQIAWVEGHEPGCRSIGALMAHVDAVIRHCAG 269
>AJ310544-1|CAC42510.1| 407|Homo sapiens EGLN2 protein protein.
Length = 407
Score = 31.9 bits (69), Expect = 2.6
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = -3
Query: 657 IDALGAGGSVDEPVIYSQDSYLPRSVNFNLTVSLFGHDFNVLEFGGRQGNLDRVLEHFLG 478
++AL GG + + + SQ + PRS+ + + GH+ G ++D V+ H G
Sbjct: 210 VEALKRGGRLRDGQLVSQRAIPPRSIRGDQIAWVEGHEPGCRSIGALMAHVDAVIRHCAG 269
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,811,132
Number of Sequences: 237096
Number of extensions: 2326167
Number of successful extensions: 5412
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5406
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9144232952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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