Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0227
         (761 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93256-1|AAB59181.1| 1110|Caenorhabditis elegans tra-1 protein.        33   0.17 
AL117202-5|CAB61040.2| 1109|Caenorhabditis elegans Hypothetical ...    33   0.17 
U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin st...    31   0.68 
Z34801-2|CAD82919.1|  884|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z34801-1|CAA84330.1|  860|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z69634-9|CAO82013.1|  575|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z69634-8|CAA93452.4|  591|Caenorhabditis elegans Hypothetical pr...    29   4.8  
U41534-6|AAB47598.1|  375|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z81109-3|CAB03246.1|  318|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AF003389-1|AAC71138.2|  865|Caenorhabditis elegans Hypothetical ...    28   6.3  
U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr...    28   8.3  
AL021493-2|CAA16393.1|  382|Caenorhabditis elegans Hypothetical ...    28   8.3  
AF067947-9|AAK68398.1|  230|Caenorhabditis elegans Hypothetical ...    28   8.3  
AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High inciden...    28   8.3  

>M93256-1|AAB59181.1| 1110|Caenorhabditis elegans tra-1 protein.
          Length = 1110

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
 Frame = -3

Query: 495  LEHFLGPKSFL-RTESPQAIYDS-LVKRFEEAKKKVE 391
            L+H+  P   +  TESPQ + D  ++++FEEAKK VE
Sbjct: 898  LDHYYPPMVVVVETESPQIVRDQEMMRQFEEAKKNVE 934


>AL117202-5|CAB61040.2| 1109|Caenorhabditis elegans Hypothetical
            protein Y47D3A.6a protein.
          Length = 1109

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
 Frame = -3

Query: 495  LEHFLGPKSFL-RTESPQAIYDS-LVKRFEEAKKKVE 391
            L+H+  P   +  TESPQ + D  ++++FEEAKK VE
Sbjct: 897  LDHYYPPMVVVVETESPQIVRDQEMMRQFEEAKKNVE 933


>U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 1 protein.
          Length = 1616

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 44/195 (22%), Positives = 87/195 (44%), Gaps = 7/195 (3%)
 Frame = -3

Query: 642  AGGSVDEPVIYSQDSYLPRSVNFNLTVSLFGHDFN--VLEFGGRQGNLDRVLEHFLGPKS 469
            +G   D   I+ ++S+L + ++ +L  ++FG ++N    + G  Q ++D+ ++  L    
Sbjct: 669  SGAQFDFAAIFEKNSFLLKDLHASLD-AVFGGNWNKYFAQIGFSQQHMDKYVQMALEKLE 727

Query: 468  FLRTESPQAIYDSLVKRFEEAKKKVEDGLTRGRRSVKTEIDSFDKNLKAEAAPYNNELDL 289
             +  ES   +            ++++ G+T     +  E+ +   N++A  A YN E D 
Sbjct: 728  SIEKESTTVVRG----------RRIQTGIT-----LLKEL-ALKMNIRARPANYN-EKDA 770

Query: 288  DIFVKLFGTDAVFLSFGDDKGFDFNKILDDILGTCS---SGISKLKHFQTDFRTH--LLF 124
               V L   D  +     D      K+++  +       S I +L + + +F TH    F
Sbjct: 771  FAMVYLRYKDMDYAILPVDTQL-IEKLIEKYISNGKVQFSEIRRLLNQEHEFETHHAAYF 829

Query: 123  LDAELAYPTSTGLPL 79
             +A   +PT+ GLPL
Sbjct: 830  YEAIRKFPTTLGLPL 844


>Z34801-2|CAD82919.1|  884|Caenorhabditis elegans Hypothetical
           protein F59A2.1b protein.
          Length = 884

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -3

Query: 438 YDSLVKRFEEAKKKVEDGLTRGRRSVKTEIDSFDKNLKAEAAPYNNELD 292
           +DSL+K  +  K + + G+T+ R  ++   D F K L   +  +  EL+
Sbjct: 26  FDSLIKSMDSLKIEHQTGVTQLRDDIRRSEDRFQKQLSDLSTNHGKELE 74


>Z34801-1|CAA84330.1|  860|Caenorhabditis elegans Hypothetical
           protein F59A2.1a protein.
          Length = 860

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -3

Query: 438 YDSLVKRFEEAKKKVEDGLTRGRRSVKTEIDSFDKNLKAEAAPYNNELD 292
           +DSL+K  +  K + + G+T+ R  ++   D F K L   +  +  EL+
Sbjct: 26  FDSLIKSMDSLKIEHQTGVTQLRDDIRRSEDRFQKQLSDLSTNHGKELE 74


>Z69634-9|CAO82013.1|  575|Caenorhabditis elegans Hypothetical
           protein B0001.3b protein.
          Length = 575

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -2

Query: 136 SSLIPRR*TSIPNFNWSSSPPQ 71
           S  I R+ TSIPN NW+ SP Q
Sbjct: 295 SGWIVRQNTSIPNCNWAISPKQ 316


>Z69634-8|CAA93452.4|  591|Caenorhabditis elegans Hypothetical
           protein B0001.3a protein.
          Length = 591

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -2

Query: 136 SSLIPRR*TSIPNFNWSSSPPQ 71
           S  I R+ TSIPN NW+ SP Q
Sbjct: 311 SGWIVRQNTSIPNCNWAISPKQ 332


>U41534-6|AAB47598.1|  375|Caenorhabditis elegans Hypothetical
           protein C16A3.4 protein.
          Length = 375

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = -3

Query: 456 ESPQAIYDSLV-KRFEEAKKKVEDGLTRGRRSVKTEIDSFDKNLKAEAAPYNNELD 292
           +S  A+ D +  K+ +E +KK+ED + +G +  + + ++  K  ++   P N+E D
Sbjct: 81  KSENAMTDHVASKKHKENEKKIEDDVKKGPKQPRKKPENLPKKPESLKEPENDEDD 136


>Z81109-3|CAB03246.1|  318|Caenorhabditis elegans Hypothetical
           protein R10D12.5 protein.
          Length = 318

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
 Frame = -3

Query: 354 EIDSFDKNLKAEAAPYNNELDLDIFVKLFGTDAVF----LSFGDDKGFDFNKILDDILGT 187
           E + FDK+++   +P +      I  +LF  + VF    L   DD+   F  +  ++ GT
Sbjct: 100 ERNIFDKSIQLAYSPAS-----PIKCQLFNVNRVFVVEKLQASDDQFVAFKTVKSEVTGT 154

Query: 186 CSSGISKLKHFQTDFRTHLLFLDAELAYPTSTGL 85
           C  G +      T++    +F+D    Y  S  +
Sbjct: 155 CEDGRTSFTRPTTNWCIK-VFVDPNALYTASNAI 187


>AF003389-1|AAC71138.2|  865|Caenorhabditis elegans Hypothetical
           protein F23H11.2 protein.
          Length = 865

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -3

Query: 216 NKILDDILGTCSSGISKLKHFQTDFRTHLLFLDAELAYPTSTGLPLHL 73
           N+  DD+LGT ++  S+   F  D  + ++  D +  Y     L +HL
Sbjct: 701 NQSCDDLLGTAATSFSRRFQFLLDALSLIIGEDKKAVYAAFVMLEMHL 748


>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical
           protein C27F2.8 protein.
          Length = 1715

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 17  RTSMLVARSNLAVAEPTKLRWRGRPVEVGYASSASRNKR 133
           R+S+L+ R+NL   EP  +  +G  + V    + +R+K+
Sbjct: 881 RSSLLLIRNNLTAIEPVVMYGKGARIGVKVEGAEARSKK 919


>AL021493-2|CAA16393.1|  382|Caenorhabditis elegans Hypothetical
           protein Y51A2B.2 protein.
          Length = 382

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/54 (24%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
 Frame = +1

Query: 259 VSTEQFHENVQIQLIVVWSCFR--FEIFVKRINFRLDRSTSSR*SIFHLLLSFF 414
           + ++ F +N++IQL+++   F+  + + +      L+ S S +  I++ ++SFF
Sbjct: 14  IPSQNFSKNLKIQLVLLLEHFQASYVLIITNFQLLLEISGSDKNWIYYCVVSFF 67


>AF067947-9|AAK68398.1|  230|Caenorhabditis elegans Hypothetical
           protein T10B5.4 protein.
          Length = 230

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 458 RKALKLFTIVWSRGSKKLRRRW 393
           R A+ LF+  W RG ++ RRRW
Sbjct: 194 RNAIFLFSKQWRRGFREPRRRW 215


>AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High incidence of
            males (increasedx chromosome loss) protein 1, isoform a
            protein.
          Length = 1281

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
 Frame = -3

Query: 582  VNFNLTVSLFGHDFNVL-EFGGRQGNLDRVLEHFLGPKSFLRTESPQAIYDSLVKRFEEA 406
            + F + VSLF   F ++ +    Q +        +  +   R +  +  YDSL + +++ 
Sbjct: 973  IYFIIFVSLFPFKFQLISDDTASQSSQSATDGPSVSEEQIQREQHIKINYDSLPREYKDV 1032

Query: 405  KKKVEDGLTRGRRSVKTEIDSFDKNLKAEAAP 310
                +DG+ +    +  EID   KN+    AP
Sbjct: 1033 DD--DDGVRQMSNRLNVEIDELQKNVSKMNAP 1062


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,045,872
Number of Sequences: 27780
Number of extensions: 348624
Number of successful extensions: 1138
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)