Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0227
         (761 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   3.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.4  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   7.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   7.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.4  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 552 GHDFNVLEFGGRQGNLDRVLEHFLGPKSF 466
           GHD  V  F  +  ++ +  E FLGP  F
Sbjct: 29  GHDAIVHLFEWKWNDIAKECEQFLGPVGF 57


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 487 FLGSQELPAYGKPSSYLR 434
           F G  E+PA+G P S  R
Sbjct: 437 FSGEYEIPAHGLPPSATR 454


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 400 LLSFFEPLDQTIVNSLRAFRTQEALGTQEMFKNAVQVTLATSK 528
           +L     L++   NSL  F T   L   E+F   ++ +L + K
Sbjct: 547 MLDLNSGLNKITRNSLDCFFTMNDLEPSEIFYEKIETSLNSDK 589


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 400 LLSFFEPLDQTIVNSLRAFRTQEALGTQEMFKNAVQVTLATSK 528
           +L     L++   NSL  F T   L   E+F   ++ +L + K
Sbjct: 547 MLDLNSGLNKITRNSLDCFFTMNDLEPSEIFYEKIETSLNSDK 589


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 648 ERLCYTTSPGRKEYLSVIRVELLWSTD 728
           ERL +    GR +YL++     +W  D
Sbjct: 93  ERLRFNDFGGRLKYLTLTDASRVWMPD 119


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 648 ERLCYTTSPGRKEYLSVIRVELLWSTD 728
           ERL +    GR +YL++     +W  D
Sbjct: 93  ERLRFNDFGGRLKYLTLTDASRVWMPD 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,089
Number of Sequences: 438
Number of extensions: 4315
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)